4A2Q,4A2W


Conserved Protein Domain Family
CARD_RIG-I_r1

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cd08816: CARD_RIG-I_r1 
Click on image for an interactive view with Cn3D
Caspase activation and recruitment domain found in RIG-I, first repeat.
Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260075
Aligned: 8 rows
Threshold Bit Score: 143.74
Created: 18-May-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
CARD2
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:CARD2 interaction site
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ####  ##                         ##                            ##
4A2Q_A         5 TADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEee-rGVSGAAALFLDAVLqlEARGWFRGMLDAMLAAG 83   mallard
ACA61272       2 TADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEee-rGVSGAAALFLDAVLqlEARGWFRGMLDAMLAAG 80   mallard
CAY86112       2 YELVKENLRRFSDYIAKILRPSLIKTFMTTHFDKEMVETILSTee-kSVTSAAQMLLDRMCylEEEGWFQAFLDTLFASD 80   Cyprinidae sp....
4A2W_A         5 TADEKRSLQCYRRYIERSLNPVYVLGNMTDWLPDELRERIRKEee-rGVSGAAALFLDAVLqlEARGWFRGMLDAMLAAG 83   mallard
Q6Q899         2 TAEQRQNLQAFRDYIKKILDPTYILSYMSSWLEDEEVQYIQAEknnkGPMEAASLFLQYLLklQSEGWFQAFLDALYHAG 81   house mouse
NP_001157171   2 YESEKRNLLRCSEYLVHILRPSYVKGFMTTYLQPEVAERILSEes-kSVTSAAQVFLDQVCllDELGWYQALLDALDAED 80   Atlantic salmon
EMP30788       2 TAEQKAGLRCYRQYIEKTLNPAYVLGNMKEWLSDVAKERIQTEeqkeGLTAAAALFVDSLLqlESEGWFRGFLDALNAAG 81   green seaturtle
AFS34609       2 YELEKESLRLYSHYIVHFLRPSYIRGFLTTYLEEEYVEKIISKer-lSQTEAAQMLLDKMLdlKEVGWFQGFLDTLRASE 80   channel catfish
Feature 1        ####       
4A2Q_A        84 YTGLAEAIENW 94   mallard
ACA61272      81 YTGLAEAIENW 91   mallard
CAY86112      81 YTGLHKAIKEW 91   Cyprinidae sp. EPC
4A2W_A        84 YTGLAEAIENW 94   mallard
Q6Q899        82 YCGLCEAIESW 92   house mouse
NP_001157171  81 YKGLCEALKKW 91   Atlantic salmon
EMP30788      82 YTGLREAIENW 92   green seaturtle
AFS34609      81 YTGLYTAISTW 91   channel catfish

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