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    mtdha metadherin a [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100710571, updated on 8-Mar-2024

    Summary

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    Gene symbol
    mtdha
    Gene description
    metadherin a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Broad expression in kidney (RPKM 15.0), skin (RPKM 13.0) and 8 other tissues See more
    Orthologs
    human zebrafish all
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    Genomic context

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    See mtdha in Genome Data Viewer
    Location:
    chromosome: LG22
    Exon count:
    12
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (20016478..20025442, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (18726905..18735831)

    Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene ribosomal protein L30 Neighboring gene lysosomal protein transmembrane 4 beta Neighboring gene ribonucleotide reductase M2 b Neighboring gene nuclear transport factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LYRIC

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      20016478..20025442 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005478477.4 → XP_005478534.1  protein LYRIC isoform X2

      Conserved Domains (1) summary
      pfam15686
      Location:6 → 421
      LYRIC; Lysine-rich CEACAM1 co-isolated protein family

    2. XM_003444178.5 → XP_003444226.1  protein LYRIC isoform X1

      UniProtKB/TrEMBL
      I3J397
      Conserved Domains (1) summary
      pfam15686
      Location:6 → 423
      LYRIC; Lysine-rich CEACAM1 co-isolated protein family
    Nucleotide Protein
    Heading Accession and Version

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