U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    AFF2 ALF transcription elongation factor 2 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100434131, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    AFF2
    Gene description
    ALF transcription elongation factor 2
    Locus tag
    CR201_G0041806
    See related
    Ensembl:ENSPPYG00000020800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AFF2 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) X NC_072008.2 (154846027..155344070)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) X NC_072008.1 (154846039..155340926)

    Chromosome X - NC_072008.2Genomic Context describing neighboring genes Neighboring gene HCLS1-associated protein X-1-like Neighboring gene ribosomal protein uL30-like Neighboring gene spermatid nuclear transition protein 3 Neighboring gene uncharacterized LOC129053090 Neighboring gene iduronate 2-sulfatase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-quadruplex RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AF4/FMR2 family member 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072008.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      154846027..155344070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009235348.4 → XP_009233623.1  AF4/FMR2 family member 2 isoform X3

      UniProtKB/TrEMBL
      A0A2J8XTU6, A0A2J8XTV0, H2PX09
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1273
      AF-4; AF-4 proto-oncoprotein

    2. XM_002832215.4 → XP_002832261.1  AF4/FMR2 family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A2J8XTS3, A0A8I5YQP1
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1298
      AF-4; AF-4 proto-oncoprotein

    3. XM_002832217.4 → XP_002832263.1  AF4/FMR2 family member 2 isoform X4

      UniProtKB/TrEMBL
      A0A2J8XTU6, H2PX09
      Conserved Domains (1) summary
      pfam05110
      Location:19 → 1269
      AF-4; AF-4 proto-oncoprotein

    4. XM_054545161.2 → XP_054401136.1  AF4/FMR2 family member 2 isoform X1

    5. XM_054545162.2 → XP_054401137.1  AF4/FMR2 family member 2 isoform X5

    6. XM_054545163.2 → XP_054401138.1  AF4/FMR2 family member 2 isoform X6

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.