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    prph2.S peripherin 2 (retinal degeneration, slow) S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398002, updated on 26-Feb-2024

    Summary

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    Official Symbol
    prph2.S
    Official Full Name
    peripherin 2 (retinal degeneration, slow) S homeolog
    Primary source
    Xenbase:XB-GENE-17339014
    Locus tag
    XELAEV_18028715mg
    See related
    EnsemblRapid:ENSXLAG00005002560
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rds; avmd; aofmd; cacd2; prph2; rds38; prph-2; prph2b; tspan22
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    Genomic context

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    See prph2.S in Genome Data Viewer
    Location:
    chromosome: 5S
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (17923666..17931255, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (17969014..17976603, complement)

    Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene BRD4 interacting chromatin remodelling complex associated protein like S homeolog Neighboring gene transcriptional regulating factor 1 S homeolog Neighboring gene ubiquitin protein ligase E3 component n-recognin 2 S homeolog Neighboring gene UTP25, small subunit processor component S homeolog Neighboring gene synaptotagmin 14 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Three homologs of rds/peripherin in Xenopus laevis photoreceptors that exhibit covalent and non-covalent interactions. Kedzierski W, et al. J Cell Sci, 1996 Oct. PMID 8923216
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification and cellular localization in Xenopus laevis photoreceptors of three Peripherin-2 family members, Prph2, Rom1 and Gp2l, which arose from gene duplication events in the common ancestors of jawed vertebrates.
      Title: Identification and cellular localization in Xenopus laevis photoreceptors of three Peripherin-2 family members, Prph2, Rom1 and Gp2l, which arose from gene duplication events in the common ancestors of jawed vertebrates.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Clone Names

    • MGC84151, MGC197222, MGC197225

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within visual perception IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    peripherin-2
    Names
    peripherin 2 (retinal degeneration, slow) b
    rds/peripherin
    retinal degeneration slow protein
    xRDS38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001088226.1 → NP_001081695.1  peripherin-2

      See identical proteins and their annotated locations for NP_001081695.1

      Status: PROVISIONAL

      Source sequence(s)
      L79915
      UniProtKB/Swiss-Prot
      O42583
      UniProtKB/TrEMBL
      A0A974CQY2, Q8UUU5
      Related
      ENSXLAP00005007615.1, ENSXLAT00005007738.1
      Conserved Domains (2) summary
      cd03162
      Location:120 → 262
      peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:20 → 281
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      17923666..17931255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O42583.1 GenPept UniProtKB/Swiss-Prot:O42583

    Gene LinkOut

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