Conserved Protein Domain Family
peripherin_like_LEL

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cd03162: peripherin_like_LEL 
Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to hereditary retinal dystrophies, which typically exhibit a wide phenotypic spectrum.
Statistics
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PSSM-Id: 239415
Aligned: 15 rows
Threshold Bit Score: 166.455
Created: 7-Nov-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
dimer interface
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:dimeric assembly observed in the CD81 crystal is predicted to resemble quaternary structure of intact CD81 at the cell surface

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      #    #   # ##  #                  #  ##  ##                                    
NP_990368 120 YTMRNELEESLYLGLRDAIKFYKDTdipgrCFLKKTVDMLQIGFQCCGNNGFRDWFEVQWvsarylnmaskevmd----- 194 chicken
CAF92972  120 YSMRSQLEASLSLGLRNAMVHYKDTdtpgrCYLKRTLDMLQIQLECCGNTGYRDWFQVQWiskryldmssslvlglfegt 199 Tetraodon nigrovir...
AAH74304  120 YTMRNELESALYRGLKDAVKHYKDTdipgrCFLKSTIDLLQIQFRCCGNNGFRDWFEIQWisaryldmgskevvn----- 194 African clawed frog
AAB64233  120 FLTRGSLESTLAHGLKNGMRYYKDTdipgrCFLKKTIDLLQIEFKCCGNNGFRDWFELQWvsnrylggrskevkd----- 194 African clawed frog
NP_957308 120 YALQPSLEESLKIGLKNGIRFYKDTdtpgrCFQKETIDRPQIEFQCCGNTNYRDWFEVQWisnryldftskevkd----- 194 zebrafish
CAG10578  120 YSMRGELEESLNQGLAEAMRFYKDTdtpgrCFLKRTVDMLQIEFQCCGNNGYKDWFQIQWissryldmskkevvd----- 194 Tetraodon nigrovir...
AAH59645  120 FLMQISLHFALAEGLKNGMKYYKDTdtpgrCFMKRTLDMTQIEFRCCGNNNYKDWFEIQWisnryldfsndeikd----- 194 zebrafish
AAH54990  120 VALRGTLEESLKIGLKNAIRFYKDTdtpgrCYQKRSMDKLQMDFQCCGNNHPKDWFEVQWisnryldfsskevkd----- 194 African clawed frog
XP_696271 119 YSMRKDLEESLYFGLRDAMRYYKDTdmpgrCYIKRTMDMLQMQFQCCGNGGYRDWFHIQWisnrylnlsnsdvve----- 193 zebrafish
NP_000318 123 LALPGSLDEALEEGLVTALAHYKDTevpghCQAKRLVDELQLRYHCCGRHGYKDWFGVQWvssryldpgdrdvad----- 197 human
Feature 1                                                                                     
NP_990368 195 --------------------------------------rfksnvdgkflvdgVPFSCCNPsspRPCIQyhltnnsahyny 236 chicken
CAF92972  200 sqssrgflepvsppmglrgppsspppywdsaavlcphsrlrsnvggrylvdqVPFSCCSTfspRPCIQqqvsdasahfny 279 Tetraodon nigrovir...
AAH74304  195 --------------------------------------rfksnvdgkylldgVPFSCCNPnspRPCIQyqitnntahyny 236 African clawed frog
AAB64233  195 --------------------------------------riqsnvdgkylidgVPFSCCNPsspRPCIQlqvtnnsahysy 236 African clawed frog
NP_957308 195 --------------------------------------rvrsnvdgrylldgVPFSCCNPaspRPCIQyslldnnahyny 236 zebrafish
CAG10578  195 --------------------------------------rlrsniegkylmdgVPFSCCNTfspRPCIQhqitnssahfny 236 Tetraodon nigrovir...
AAH59645  195 --------------------------------------rvqsnvegkflmdsVPFSCCNPgspRPCIQhhltnnsahysy 236 zebrafish
AAH54990  195 --------------------------------------riksnvdgrylmdsVPFSCCNPsspRPCIQmqitnnsahysy 236 African clawed frog
XP_696271 194 --------------------------------------rirsnvegkylidgVPFSCCGLyspRPCIQhqitnnsahyny 235 zebrafish
NP_000318 198 --------------------------------------riqsnveglyltdgVPFSCCNPhspRPCLQnrlsdsyahplf 239 human
Feature 1                               
NP_990368 237 dflteeLNIWVKGCREALLEYYTAIM 262 chicken
CAF92972  280 drlsqrLNLWTRGCREALMEHYTGIG 305 Tetraodon nigroviridis
AAH74304  237 dflteeLNIWTQGCREALLGYYDELM 262 African clawed frog
AAB64233  237 dhqteeLNLWSKGCKEALLNYYTSMM 262 African clawed frog
NP_957308 237 eyqseeLNLYNRGCRQALVSYYMGLM 262 zebrafish
CAG10578  237 ehqteiLNLWMTGCRQALLDYYTHIM 262 Tetraodon nigroviridis
AAH59645  237 dhhtedLNVWTRGCREALVSYYGGMM 262 zebrafish
AAH54990  237 nyqsdeLNIWVRGCREALLSYYTGIM 262 African clawed frog
XP_696271 236 dylkedLNLNRRGCLQALLEHYTQIM 261 zebrafish
NP_000318 240 dprqpnQNLWAQGCHEVLLEHLQDLA 265 human

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