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    ATXN10 ataxin 10 [ Sus scrofa (pig) ]

    Gene ID: 414389, updated on 5-Mar-2024

    Summary

    Official Symbol
    ATXN10provided by VGNC
    Official Full Name
    ataxin 10provided by VGNC
    Primary source
    VGNC:VGNC:85688
    See related
    Ensembl:ENSSSCG00000024864
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    SCA10
    Expression
    Ubiquitous expression in ovary (RPKM 47.2), kidney (RPKM 31.8) and 8 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See ATXN10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (3637794..3798204, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (809349..1027816, complement)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260613 Neighboring gene Wnt family member 7B Neighboring gene uncharacterized LOC106510257 Neighboring gene fibulin 1 Neighboring gene uncharacterized LOC102160181

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    General protein information

    Preferred Names
    ataxin-10
    Names
    spinocerbellar ataxia type 10 protein-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      3637794..3798204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013997462.2XP_013852916.2  ataxin-10 isoform X1

      UniProtKB/TrEMBL
      A0A480M0G4, A0A480ZZX1, A0A4X1W4J5, A0A5G2QWQ6, A0A8D0Y4D8
      Related
      ENSSSCP00000068580.2, ENSSSCT00000070263.2
      Conserved Domains (1) summary
      pfam09759
      Location:370467
      Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain
    2. XM_021091386.1XP_020947045.1  ataxin-10 isoform X3

      UniProtKB/TrEMBL
      A0A4X1W4X3, A0A5G2R1F6, A0A8D1KI75
      Related
      ENSSSCP00000064352.2, ENSSSCT00000072203.2
      Conserved Domains (1) summary
      pfam09759
      Location:317414
      Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain
    3. XM_013997463.2XP_013852917.2  ataxin-10 isoform X2

      UniProtKB/TrEMBL
      A0A4X1VZ06, A0A8D0Y7Q6
      Related
      ENSSSCP00000026121.3, ENSSSCT00000023423.4
      Conserved Domains (1) summary
      pfam09759
      Location:343440
      Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain