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    Prr29 proline rich 29 [ Mus musculus (house mouse) ]

    Gene ID: 75573, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Prr29provided by MGI
    Official Full Name
    proline rich 29provided by MGI
    Primary source
    MGI:MGI:1922823
    See related
    Ensembl:ENSMUSG00000009210 AllianceGenome:MGI:1922823
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310007L24Rik
    Summary
    Orthologous to human PRR29 (proline rich 29). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in ovary adult (RPKM 17.3), lung adult (RPKM 9.1) and 4 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    11 E1; 11 69.05 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106255838..106267940)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (106374762..106377114)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10721 Neighboring gene STARR-seq mESC enhancer starr_30919 Neighboring gene STARR-positive B cell enhancer ABC_E7081 Neighboring gene growth hormone Neighboring gene CD79B antigen Neighboring gene sodium channel, voltage-gated, type IV, alpha Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:106235839-106236093 Neighboring gene STARR-positive B cell enhancer ABC_E10722 Neighboring gene intercellular adhesion molecule 2 Neighboring gene endoplasmic reticulum to nucleus signalling 1 Neighboring gene STARR-positive B cell enhancer ABC_E9845 Neighboring gene STARR-positive B cell enhancer ABC_E10723 Neighboring gene STARR-positive B cell enhancer ABC_E7082

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    proline-rich protein 29
    NP_083621.1
    XP_006534451.1
    XP_036012949.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029345.1 → NP_083621.1  proline-rich protein 29

      See identical proteins and their annotated locations for NP_083621.1

      Status: VALIDATED

      Source sequence(s)
      AK009213, AK153786, BC116233
      Consensus CDS
      CCDS48962.1
      UniProtKB/Swiss-Prot
      B1ARI9, Q9D7I4
      UniProtKB/TrEMBL
      A0A087WQW1
      Related
      ENSMUSP00000102429.2, ENSMUST00000106816.8
      Conserved Domains (1) summary
      pfam15248
      Location:42 → 87
      DUF4587; Domain of unknown function (DUF4587)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      106255838..106267940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157056.1 → XP_036012949.1  proline-rich protein 29 isoform X1

      Related
      ENSMUSP00000009354.4, ENSMUST00000009354.10
      Conserved Domains (1) summary
      pfam15248
      Location:1 → 59
      DUF4587; Domain of unknown function (DUF4587)

    2. XM_006534388.3 → XP_006534451.1  proline-rich protein 29 isoform X2

      UniProtKB/TrEMBL
      A0A087WQH2
      Related
      ENSMUSP00000140194.2, ENSMUST00000188561.7
      Conserved Domains (1) summary
      pfam15248
      Location:42 → 88
      DUF4587; Domain of unknown function (DUF4587)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B1ARI9.1 GenPept UniProtKB/Swiss-Prot:B1ARI9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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