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    Heph hephaestin [ Mus musculus (house mouse) ]

    Gene ID: 15203, updated on 21-Apr-2024

    Summary

    Official Symbol
    Hephprovided by MGI
    Official Full Name
    hephaestinprovided by MGI
    Primary source
    MGI:MGI:1332240
    See related
    Ensembl:ENSMUSG00000031209 AllianceGenome:MGI:1332240
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cpl; sla; mKIAA0698; C130006F04Rik
    Summary
    Predicted to enable copper ion binding activity; ferrous iron binding activity; and ferroxidase activity. Acts upstream of or within erythrocyte differentiation. Predicted to be located in basolateral plasma membrane and perinuclear region of cytoplasm. Predicted to be active in plasma membrane. Orthologous to human HEPH (hephaestin). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in large intestine adult (RPKM 13.9), ovary adult (RPKM 10.4) and 15 other tissues See more
    Orthologs
    NEW
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    Genomic context

    Location:
    X C3; X 42.69 cM
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (95499042..95618091)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (96455436..96574485)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 18171 Neighboring gene heat shock transcription factor 3 Neighboring gene STARR-seq mESC enhancer starr_47582 Neighboring gene cofilin 1, non-muscle pseudogene Neighboring gene STARR-seq mESC enhancer starr_47583 Neighboring gene ribosomal protein L17, pseudogene 8 Neighboring gene heat shock protein 1 (chaperonin) pseudogene 10 Neighboring gene STARR-seq mESC enhancer starr_47584 Neighboring gene G protein-coupled receptor 165 Neighboring gene STARR-seq mESC enhancer starr_47585 Neighboring gene STARR-seq mESC enhancer starr_47586 Neighboring gene predicted gene 14803

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Chemically induced (ENU) (1)  1 citation
    • Radiation induced (1) 
    • Endonuclease-mediated (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables copper ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ferrous iron binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ferroxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within copper ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within erythrocyte differentiation IMP
    Inferred from Mutant Phenotype
    more info
     
    involved_in iron ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in iron ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within iron ion transport TAS
    Traceable Author Statement
    more info
    PubMed 
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    hephaestin
    Names
    haphaestin
    sex linked anemia

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159627.1NP_001153099.1  hephaestin isoform 1 precursor

      See identical proteins and their annotated locations for NP_001153099.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents use of an alternate promoter, compared to variant 1, and enocdes the longest isoform (1). Both variants 1 and 3 encode the same isoform.
      Source sequence(s)
      AF082567, AK129194, CJ053588
      Consensus CDS
      CCDS30289.1
      UniProtKB/Swiss-Prot
      A2AI63, Q6ZQ65, Q80Y80, Q8C4S2, Q9Z0Z4
      Related
      ENSMUSP00000109469.2, ENSMUST00000113838.8
      Conserved Domains (5) summary
      cd04222
      Location:26208
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04224
      Location:377571
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:732903
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:223363
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cl19115
      Location:574717
      Cupredoxin; Cupredoxin superfamily
    2. NM_001159628.1NP_001153100.1  hephaestin isoform 3 precursor

      See identical proteins and their annotated locations for NP_001153100.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in the 3' coding region, compared to variant 1. The resulting isoform (3) lacks one internal amino acid near the C-terminus, compared to isoform 1.
      Source sequence(s)
      AL732365
      UniProtKB/Swiss-Prot
      Q9Z0Z4
      Conserved Domains (5) summary
      cd04222
      Location:26208
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04224
      Location:377571
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:732903
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:223363
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cl19115
      Location:574717
      Cupredoxin; Cupredoxin superfamily
    3. NM_010417.2NP_034547.2  hephaestin isoform 1 precursor

      See identical proteins and their annotated locations for NP_034547.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Both variants 1 and 3 encode the same isoform.
      Source sequence(s)
      AF082567, AK129194, CJ067085
      Consensus CDS
      CCDS30289.1
      UniProtKB/Swiss-Prot
      A2AI63, Q6ZQ65, Q80Y80, Q8C4S2, Q9Z0Z4
      Related
      ENSMUSP00000033553.8, ENSMUST00000033553.14
      Conserved Domains (5) summary
      cd04222
      Location:26208
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd04224
      Location:377571
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:732903
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:223363
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cl19115
      Location:574717
      Cupredoxin; Cupredoxin superfamily
    4. NM_181273.4NP_851790.1  hephaestin isoform 2 precursor

      See identical proteins and their annotated locations for NP_851790.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter and uses an alternate 3' splice pattern, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK081330, CJ053588
      Consensus CDS
      CCDS30290.1
      UniProtKB/TrEMBL
      A2AI62
      Related
      ENSMUSP00000078301.6, ENSMUST00000079322.12
      Conserved Domains (3) summary
      cd04222
      Location:26208
      CuRO_1_ceruloplasmin; The first cupredoxin domain of Ceruloplasmin
      cd11021
      Location:223363
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cl19115
      Location:377529
      Cupredoxin; Cupredoxin superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      95499042..95618091
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)