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ATG5 autophagy related 5 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696874, updated on 5-Mar-2024

Summary

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Official Symbol
ATG5provided by VGNC
Official Full Name
autophagy related 5provided by VGNC
Primary source
VGNC:VGNC:70165
Locus tag
EGK_15205
See related
Ensembl:ENSMMUG00000019679
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (66883461..67018846)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (103821448..103994012)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677534 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene PR/SET domain 1 Neighboring gene uncharacterized LOC114677390

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in C-terminal protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg12-Atg5-Atg16 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy protein 5
Names
ATG5 autophagy related 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    66883461..67018846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001088300.3 → XP_001088300.1  autophagy protein 5 isoform X1

    See identical proteins and their annotated locations for XP_001088300.1

    UniProtKB/TrEMBL
    A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
    Related
    ENSMMUP00000070664.1, ENSMMUT00000080113.1
    Conserved Domains (1) summary
    pfam04106
    Location:79 → 270
    APG5; Autophagy protein Apg5

  2. XM_015137017.2 → XP_014992503.1  autophagy protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QJY3, F7GH37
    Related
    ENSMMUP00000074063.1, ENSMMUT00000104187.1
    Conserved Domains (1) summary
    pfam04106
    Location:1 → 192
    APG5; Autophagy protein Apg5

  3. XM_015137018.2 → XP_014992504.1  autophagy protein 5 isoform X3

    Related
    ENSMMUP00000025859.4, ENSMMUT00000027646.4
    Conserved Domains (1) summary
    pfam04106
    Location:79 → 189
    APG5; Autophagy protein Apg5

  4. XM_028847306.1 → XP_028703139.1  autophagy protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
    Related
    ENSMMUP00000025856.4, ENSMMUT00000027643.4
    Conserved Domains (1) summary
    pfam04106
    Location:79 → 270
    APG5; Autophagy protein Apg5

  5. XM_028847307.1 → XP_028703140.1  autophagy protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
    Conserved Domains (1) summary
    pfam04106
    Location:79 → 270
    APG5; Autophagy protein Apg5

  6. XM_028847308.1 → XP_028703141.1  autophagy protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QJY3, F7GH37
    Related
    ENSMMUP00000033312.3, ENSMMUT00000040246.3
    Conserved Domains (1) summary
    pfam04106
    Location:1 → 192
    APG5; Autophagy protein Apg5
Nucleotide Protein
Heading Accession and Version

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