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Vmn2r87 vomeronasal 2, receptor 87 [ Mus musculus (house mouse) ]

Gene ID: 625131, updated on 11-Apr-2024

Summary

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Official Symbol
Vmn2r87provided by MGI
Official Full Name
vomeronasal 2, receptor 87provided by MGI
Primary source
MGI:MGI:3645796
See related
Ensembl:ENSMUSG00000091511 AllianceGenome:MGI:3645796
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG625131
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cortex adult (RPKM 1.2), frontal lobe adult (RPKM 0.7) and 7 other tissues See more
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Genomic context

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See Vmn2r87 in Genome Data Viewer
Location:
10 D3; 10 77.93 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (130307690..130333248, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (130471821..130497379, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor 86 Neighboring gene opioid growth factor receptor-like 1 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr10:129971896-129972197 Neighboring gene STARR-positive B cell enhancer ABC_E2344 Neighboring gene signal recognition particle 19 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8381 Neighboring gene STARR-seq mESC enhancer starr_28337 Neighboring gene predicted gene, 31793 Neighboring gene predicted gene, 23793

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal receptor Vmn2r87

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001103366.1 → NP_001096836.1  vomeronasal receptor Vmn2r87 precursor

    Status: INFERRED

    Source sequence(s)
    AC152945
    Consensus CDS
    CCDS48738.1
    UniProtKB/TrEMBL
    A0A3B2WBK8, E9PZX4
    Related
    ENSMUSP00000129215.3, ENSMUST00000164227.4
    Conserved Domains (3) summary
    cd06365
    Location:40 → 500
    PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam00003
    Location:596 → 829
    7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
    pfam07562
    Location:509 → 561
    NCD3G; Nine Cysteines Domain of family 3 GPCR

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    130307690..130333248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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