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samd11 sterile alpha motif domain containing 11 [ Danio rerio (zebrafish) ]

Gene ID: 569122, updated on 11-Apr-2024

Summary

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Official Symbol
samd11provided by ZNC
Official Full Name
sterile alpha motif domain containing 11provided by ZNC
Primary source
ZFIN:ZDB-GENE-060428-2
See related
Ensembl:ENSDARG00000077852 AllianceGenome:ZFIN:ZDB-GENE-060428-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
samd11l
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (23020114..23123901)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (23093470..23197350)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene arginine-glutamic acid dipeptide (RE) repeats a Neighboring gene uncharacterized LOC101883493 Neighboring gene NOC2-like nucleolar associated transcriptional repressor Neighboring gene kelch-like family member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of mr-s, a novel SAM domain protein, predominantly expressed in retinal photoreceptor cells. Inoue T, et al. BMC Dev Biol, 2006 Mar 16. PMID 16539743, Free PMC Article
  2. foxl2 and foxl3 are two ancient paralogs that remain fully functional in teleosts. Crespo B, et al. Gen Comp Endocrinol, 2013 Dec 1. PMID 24045113
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 11
Names
sterile alpha motif domain containing 11, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    23020114..23123901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009296908.3 → XP_009295183.1  sterile alpha motif domain-containing protein 11 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AMZ4
    Conserved Domains (3) summary
    smart00454
    Location:735 → 775
    SAM; Sterile alpha motif
    pfam01342
    Location:93 → 165
    SAND; SAND domain
    cl15755
    Location:734 → 785
    SAM_superfamily; SAM (Sterile alpha motif )

  2. XM_009296907.3 → XP_009295182.1  sterile alpha motif domain-containing protein 11 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AVF8, E7F6B2
    Related
    ENSDARP00000112558.1, ENSDART00000146463.3
    Conserved Domains (3) summary
    cd09579
    Location:734 → 801
    SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group
    smart00454
    Location:735 → 791
    SAM; Sterile alpha motif
    pfam01342
    Location:93 → 165
    SAND; SAND domain

  3. XM_021469959.1 → XP_021325634.1  sterile alpha motif domain-containing protein 11 isoform X4

    UniProtKB/TrEMBL
    A0A8M9PL54
    Related
    ENSDARP00000152637.1, ENSDART00000189843.1
    Conserved Domains (1) summary
    cd09579
    Location:575 → 642
    SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

  4. XM_021469960.1 → XP_021325635.1  sterile alpha motif domain-containing protein 11 isoform X5

    UniProtKB/TrEMBL
    A0A8M9PWU9
    Conserved Domains (1) summary
    cd09579
    Location:474 → 541
    SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

  5. XM_009296913.3 → XP_009295188.1  sterile alpha motif domain-containing protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PWY4
    Conserved Domains (1) summary
    cd09579
    Location:460 → 527
    SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395148.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    10927..46325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473684.1 → XP_021329359.1  sterile alpha motif domain-containing protein 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PWY4
    Conserved Domains (1) summary
    cd09579
    Location:460 → 527
    SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

  2. XM_021473685.1 → XP_021329360.1  sterile alpha motif domain-containing protein 11 isoform X6

    UniProtKB/TrEMBL
    A0A8M9Q7Z7
    Conserved Domains (1) summary
    cl15755
    Location:460 → 511
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein Strain
Heading Accession and Version

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