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zgc:113265 zgc:113265 [ Danio rerio (zebrafish) ]

Gene ID: 541498, updated on 11-Apr-2024

Summary

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Official Symbol
zgc:113265provided by ZNC
Official Full Name
zgc:113265provided by ZNC
Primary source
ZFIN:ZDB-GENE-050327-21
See related
AllianceGenome:ZFIN:ZDB-GENE-050327-21
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (60044422..60056506)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (59747523..59771686)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene RecQ helicase-like 5 Neighboring gene si:ch211-110e21.3 Neighboring gene si:ch211-110e21.4 Neighboring gene zgc:113030 Neighboring gene uncharacterized LOC101882598 Neighboring gene gastrula zinc finger protein XlCGF49.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA integration IEA
Inferred from Electronic Annotation
more info
  
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
  
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein XlCGF8.2DB; uncharacterized protein LOC541498; uncharacterized protein zgc:113265

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    60044422..60056506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354852.2 → XP_017210341.1  uncharacterized protein zgc:113265 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z5T1
    Conserved Domains (5) summary
    cd01644
    Location:971 → 1191
    RT_pepA17; RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by ...
    pfam03564
    Location:342 → 461
    DUF1759; Protein of unknown function (DUF1759)
    pfam05380
    Location:1205 → 1365
    Peptidase_A17; Pao retrotransposon peptidase
    pfam16515
    Location:29 → 110
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
    cl21549
    Location:1694 → 1786
    rve; Integrase core domain

  2. XM_017354851.2 → XP_017210340.1  uncharacterized protein zgc:113265 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z5T1
    Conserved Domains (5) summary
    cd01644
    Location:971 → 1191
    RT_pepA17; RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by ...
    pfam03564
    Location:342 → 461
    DUF1759; Protein of unknown function (DUF1759)
    pfam05380
    Location:1205 → 1365
    Peptidase_A17; Pao retrotransposon peptidase
    pfam16515
    Location:29 → 110
    HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
    cl21549
    Location:1694 → 1786
    rve; Integrase core domain

  3. XM_021474766.1 → XP_021330441.1  gastrula zinc finger protein XlCGF8.2DB isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q5L1
    Conserved Domains (2) summary
    COG5048
    Location:34 → 312
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:38 → 58
    ZF_C2H2; C2H2 Zn finger [structural motif]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001014311.1: Suppressed sequence

    Description
    NM_001014311.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ZNF808 (GeneID:388558).
Nucleotide Protein Strain
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