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ATXN2 ataxin 2 [ Bos taurus (cattle) ]

Gene ID: 532649, updated on 3-Apr-2024

Summary

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Official Symbol
ATXN2provided by VGNC
Official Full Name
ataxin 2provided by VGNC
Primary source
VGNC:VGNC:26340
See related
BGD:BT11091; Ensembl:ENSBTAG00000022069
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (55178840..55280567, complement)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene cut like homeobox 2 Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene SH2B adaptor protein 3 Neighboring gene E3 SUMO-protein ligase NSE2-like Neighboring gene acyl-CoA dehydrogenase family member 10 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene BRCA1 associated protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    55178840..55280567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015475521.2 → XP_015331007.1  ataxin-2 isoform X9

    UniProtKB/TrEMBL
    E1BE88
    Conserved Domains (3) summary
    pfam06741
    Location:237 → 298
    LsmAD; LsmAD domain
    pfam07145
    Location:666 → 682
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:95 → 164
    SM-ATX; Ataxin 2 SM domain

  2. XM_059876382.1 → XP_059732365.1  ataxin-2 isoform X8

    Related
    ENSBTAP00000066438.2, ENSBTAT00000080970.2

  3. XM_024977720.2 → XP_024833488.1  ataxin-2 isoform X7

    UniProtKB/TrEMBL
    A0A3Q1N2W5
    Related
    ENSBTAP00000085712.1, ENSBTAT00000109134.1
    Conserved Domains (4) summary
    pfam06741
    Location:237 → 298
    LsmAD; LsmAD domain
    pfam14438
    Location:96 → 169
    SM-ATX; Ataxin 2 SM domain
    cl25764
    Location:757 → 945
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:481 → 934
    Atrophin-1; Atrophin-1 family

  4. XM_015475517.2 → XP_015331003.1  ataxin-2 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1M594
    Conserved Domains (3) summary
    pfam06741
    Location:237 → 298
    LsmAD; LsmAD domain
    pfam07145
    Location:736 → 752
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:95 → 164
    SM-ATX; Ataxin 2 SM domain

  5. XM_002694500.4 → XP_002694546.2  ataxin-2 isoform X2

  6. XM_059876381.1 → XP_059732364.1  ataxin-2 isoform X6

  7. XM_015475516.2 → XP_015331002.1  ataxin-2 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M594
    Related
    ENSBTAP00000068805.2, ENSBTAT00000084263.2
    Conserved Domains (3) summary
    pfam06741
    Location:237 → 298
    LsmAD; LsmAD domain
    pfam07145
    Location:736 → 752
    PAM2; Ataxin-2 C-terminal region
    pfam14438
    Location:95 → 164
    SM-ATX; Ataxin 2 SM domain

  8. XM_059876380.1 → XP_059732363.1  ataxin-2 isoform X5

    Related
    ENSBTAP00000063672.2, ENSBTAT00000084539.2

  9. XM_024977714.2 → XP_024833482.2  ataxin-2 isoform X1

    Related
    ENSBTAP00000029618.5, ENSBTAT00000029620.5

  10. XM_059876383.1 → XP_059732366.1  ataxin-2 isoform X10

    Related
    ENSBTAP00000072252.2, ENSBTAT00000076058.2

  11. XM_059876384.1 → XP_059732367.1  ataxin-2 isoform X11

Nucleotide Protein Strain
Heading Accession and Version

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