NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1387216840|ref|XP_024833488|]
View 

ataxin-2 isoform X7 [Bos taurus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 96-169 4.33e-21

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 88.38  E-value: 4.33e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840   96 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESILFKCSDFVVVQFK 169
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 237-298 8.21e-16

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 8.21e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840  237 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 298
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 757-945 1.92e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 55.43  E-value: 1.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  757 KPSTTPTSPRPQAQPSPSMVGHQ--------------QPTPvytqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAK 822
Cdd:pfam09770  169 KAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKK----PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  823 TYRAVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNA 901
Cdd:pfam09770  245 QPQQQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYP 317

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1387216840  902 RMMAPPTHAQPGlvsssatqygahEQTHAMYVSTGSLAQQYAHP 945
Cdd:pfam09770  318 QNPQPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 481-934 1.55e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  481 TPPSEAAAPPTARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTP---SGPVLASPQAGIIPAEAVAMPVPAASP 557
Cdd:PHA03247  2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPvddRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  558 TPAS---PASNRAVTPSLEAKDSRLQDQRQNSPAGNKENMKPSETSSSFSKAENKGISPIVSEHRKQIDDLKKFKNDfRL 634
Cdd:PHA03247  2632 SPAAnepDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP-EP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  635 QPSSTSESMDQLLNKNREGEKSRDLIKDKIEPNAKDSFIENSSNCTSGSSKPSSPSISPSVLSNTEHKRGPEVTSQGVQT 714
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  715 SSPGCKQEKEDKEEKKDAAE-QVRKSTLNPNAKefnPRSFSQPKPSTTPTSPRPQAQPSPSMVG-----------HQQPT 782
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAvLAPAAALPPAAS---PAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  783 PVYTQPVCFAPNMMY-------PVPVSPGVQPLYPIPMTPMPVNQAKTY-RAVPNMPQQRQDQHHQSTMMHPASAAgPPI 854
Cdd:PHA03247  2868 SRSPAAKPAAPARPPvrrlarpAVSRSTESFALPPDQPERPPQPQAPPPpQPQPQPPPPPQPQPPPPPPPRPQPPL-APT 2946

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  855 VATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPhvySPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYVS 934
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP---APSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 339-577 5.79e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  339 QNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRppsryqsgPNSLPPRAATPTRPPSRPPS 418
Cdd:PHA03247  2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA--------PDPPPPSPSPAANEPDPHPP 2643

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  419 RPSRPPSHPSAHGSPAPVStMPKRMSSEGPPrmsPKAQRHPRNHRVSAGRGSISSGLEFVSHTPPSEAAAPPTARTSPAG 498
Cdd:PHA03247  2644 PTVPPPERPRDDPAPGRVS-RPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  499 GTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPV-LASPQAGIIPAEAVAMPVPAASPTPASPASnrAVTPSLEAKDS 577
Cdd:PHA03247  2720 PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPArPARPPTTAGPPAPAPPAAPAAGPPRRLTRP--AVASLSESRES 2797
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 96-169 4.33e-21

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 88.38  E-value: 4.33e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840   96 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESILFKCSDFVVVQFK 169
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 237-298 8.21e-16

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 8.21e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840  237 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 298
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 757-945 1.92e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 55.43  E-value: 1.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  757 KPSTTPTSPRPQAQPSPSMVGHQ--------------QPTPvytqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAK 822
Cdd:pfam09770  169 KAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKK----PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  823 TYRAVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNA 901
Cdd:pfam09770  245 QPQQQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYP 317

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1387216840  902 RMMAPPTHAQPGlvsssatqygahEQTHAMYVSTGSLAQQYAHP 945
Cdd:pfam09770  318 QNPQPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
PHA03247 PHA03247
large tegument protein UL36; Provisional
 481-934 1.55e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  481 TPPSEAAAPPTARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTP---SGPVLASPQAGIIPAEAVAMPVPAASP 557
Cdd:PHA03247  2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPvddRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  558 TPAS---PASNRAVTPSLEAKDSRLQDQRQNSPAGNKENMKPSETSSSFSKAENKGISPIVSEHRKQIDDLKKFKNDfRL 634
Cdd:PHA03247  2632 SPAAnepDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP-EP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  635 QPSSTSESMDQLLNKNREGEKSRDLIKDKIEPNAKDSFIENSSNCTSGSSKPSSPSISPSVLSNTEHKRGPEVTSQGVQT 714
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  715 SSPGCKQEKEDKEEKKDAAE-QVRKSTLNPNAKefnPRSFSQPKPSTTPTSPRPQAQPSPSMVG-----------HQQPT 782
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAvLAPAAALPPAAS---PAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  783 PVYTQPVCFAPNMMY-------PVPVSPGVQPLYPIPMTPMPVNQAKTY-RAVPNMPQQRQDQHHQSTMMHPASAAgPPI 854
Cdd:PHA03247  2868 SRSPAAKPAAPARPPvrrlarpAVSRSTESFALPPDQPERPPQPQAPPPpQPQPQPPPPPQPQPPPPPPPRPQPPL-APT 2946

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  855 VATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPhvySPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYVS 934
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP---APSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PHA03247 PHA03247
large tegument protein UL36; Provisional
 756-1054 3.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  756 PKPSTTPTSPRPQAQPSP--SMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQ------PLYPIPMTPMPVNQAKTYRAV 827
Cdd:PHA03247  2674 AQASSPPQRPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarqasPALPAAPAPPAVPAGPATPGG 2753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  828 PNMPQQRQDQHHQSTMMHPAS-AAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMMAP 906
Cdd:PHA03247  2754 PARPARPPTTAGPPAPAPPAApAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPLPP 2830

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  907 PTHAQPGLVSSSATQYGAHEQTHAMYVSTGSLA------QQYAHPNATLHPH---------------------------T 953
Cdd:PHA03247  2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrppsrSPAAKPAAPARPPvrrlarpavsrstesfalppdqperppQ 2910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  954 PHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSfpaaqqt 1033
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA------- 2983

                          330       340
                   ....*....|....*....|.
gi 1387216840 1034 vftihPSHVQPAYTNPPHMAH 1054
Cdd:PHA03247  2984 -----PSREAPASSTPPLTGH 2999
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 764-877 1.19e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 45.95  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  764 SPRPQAQPSPS-MVGHQQPTPVYTQpvcfAPNMMYP-VPVSPGVQPLYPIPMTPMPVNQAKTYravPNMPQQRQDQHHQS 841
Cdd:TIGR01628  379 QPRMRQLPMGSpMGGAMGQPPYYGQ----GPQQQFNgQPLGWPRMSMMPTPMGPGGPLRPNGL---APMNAVRAPSRNAQ 451

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1387216840  842 TMMHPASAagPPIVATPPAYSTQyvaySPQQFPNQP 877
Cdd:TIGR01628  452 NAAQKPPM--QPVMYPPNYQSLP----LSQDLPQPQ 481
PAM2 pfam07145
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ...
 737-752 5.55e-03

Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.


Pssm-ID: 429316  Cd Length: 17  Bit Score: 35.28  E-value: 5.55e-03
                           10
                   ....*....|....*.
gi 1387216840  737 RKSTLNPNAKEFNPRS 752
Cdd:pfam07145    1 SKSKLNPNAKEFVPSF 16
PHA03247 PHA03247
large tegument protein UL36; Provisional
 339-577 5.79e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  339 QNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRppsryqsgPNSLPPRAATPTRPPSRPPS 418
Cdd:PHA03247  2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA--------PDPPPPSPSPAANEPDPHPP 2643

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  419 RPSRPPSHPSAHGSPAPVStMPKRMSSEGPPrmsPKAQRHPRNHRVSAGRGSISSGLEFVSHTPPSEAAAPPTARTSPAG 498
Cdd:PHA03247  2644 PTVPPPERPRDDPAPGRVS-RPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  499 GTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPV-LASPQAGIIPAEAVAMPVPAASPTPASPASnrAVTPSLEAKDS 577
Cdd:PHA03247  2720 PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPArPARPPTTAGPPAPAPPAAPAAGPPRRLTRP--AVASLSESRES 2797
Sm_like cd00600
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to ...
 100-167 7.71e-03

Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.


Pssm-ID: 212462 [Multi-domain]  Cd Length: 63  Bit Score: 36.07  E-value: 7.71e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840  100 LTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTEsssgpKREEIMESILFKCSDFVVVQ 167
Cdd:cd00600      1 LKDFIGKTVSVELKDGRVLTGTLVAFDKYMNLVLDDVVETGRD-----GKVRVLGLVLIRGSNIVSIR 63
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 96-169 4.33e-21

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 88.38  E-value: 4.33e-21
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840   96 MVHILTSVVGSKCEVQVKNGGIYEGVFKTYSP--KCDLVLDAAHEKSTESSSG--PKREEIMESILFKCSDFVVVQFK 169
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASLekDFGVVLKMARRIKKSNGSGlnPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 237-298 8.21e-16

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 72.60  E-value: 8.21e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840  237 YGVVSTYDSSLssYTVPLERdNSEEFLKREARANQLAEEIESSAQYKARVALENDDR------SEEEK 298
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERGLDvddsglDEEDK 65
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 757-945 1.92e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 55.43  E-value: 1.92e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  757 KPSTTPTSPRPQAQPSPSMVGHQ--------------QPTPvytqPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAK 822
Cdd:pfam09770  169 KAAAPAPAPQPAAQPASLPAPSRkmmsleeveaamraQAKK----PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  823 TYRAVPNMPQQRQDQHHQ-STMMHPASAAGPPIVATPPaystqyvAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNA 901
Cdd:pfam09770  245 QPQQQPQQPQQHPGQGHPvTILQRPQSPQPDPAQPSIQ-------PQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYP 317

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1387216840  902 RMMAPPTHAQPGlvsssatqygahEQTHAMYVSTGSLAQQYAHP 945
Cdd:pfam09770  318 QNPQPGVQPAPA------------HQAHRQQGSFGRQAPIITHP 349
PHA03247 PHA03247
large tegument protein UL36; Provisional
 481-934 1.55e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.55e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  481 TPPSEAAAPPTARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTP---SGPVLASPQAGIIPAEAVAMPVPAASP 557
Cdd:PHA03247  2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPvddRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  558 TPAS---PASNRAVTPSLEAKDSRLQDQRQNSPAGNKENMKPSETSSSFSKAENKGISPIVSEHRKQIDDLKKFKNDfRL 634
Cdd:PHA03247  2632 SPAAnepDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP-EP 2710

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  635 QPSSTSESMDQLLNKNREGEKSRDLIKDKIEPNAKDSFIENSSNCTSGSSKPSSPSISPSVLSNTEHKRGPEVTSQGVQT 714
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  715 SSPGCKQEKEDKEEKKDAAE-QVRKSTLNPNAKefnPRSFSQPKPSTTPTSPRPQAQPSPSMVG-----------HQQPT 782
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAvLAPAAALPPAAS---PAGPLPPPTSAQPTAPPPPPGPPPPSLPlggsvapggdvRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  783 PVYTQPVCFAPNMMY-------PVPVSPGVQPLYPIPMTPMPVNQAKTY-RAVPNMPQQRQDQHHQSTMMHPASAAgPPI 854
Cdd:PHA03247  2868 SRSPAAKPAAPARPPvrrlarpAVSRSTESFALPPDQPERPPQPQAPPPpQPQPQPPPPPQPQPPPPPPPRPQPPL-APT 2946

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  855 VATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPhvySPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYVS 934
Cdd:PHA03247  2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP---APSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVS 3023
PHA03247 PHA03247
large tegument protein UL36; Provisional
 756-1054 3.88e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  756 PKPSTTPTSPRPQAQPSP--SMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQ------PLYPIPMTPMPVNQAKTYRAV 827
Cdd:PHA03247  2674 AQASSPPQRPRRRAARPTvgSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAaarqasPALPAAPAPPAVPAGPATPGG 2753

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  828 PNMPQQRQDQHHQSTMMHPAS-AAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMMAP 906
Cdd:PHA03247  2754 PARPARPPTTAGPPAPAPPAApAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPLPP 2830

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  907 PTHAQPGLVSSSATQYGAHEQTHAMYVSTGSLA------QQYAHPNATLHPH---------------------------T 953
Cdd:PHA03247  2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrppsrSPAAKPAAPARPPvrrlarpavsrstesfalppdqperppQ 2910

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  954 PHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSfpaaqqt 1033
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPA------- 2983

                          330       340
                   ....*....|....*....|.
gi 1387216840 1034 vftihPSHVQPAYTNPPHMAH 1054
Cdd:PHA03247  2984 -----PSREAPASSTPPLTGH 2999
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 735-980 1.71e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 1.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  735 QVRKSTLNPNAKefnprsfSQPKPSTTPTSPRPQAQPSPsmvghqQPTPVYTQPVCFA-PNMMYPVPVSP--------GV 805
Cdd:pfam09770   99 QVRFNRQQPAAR-------AAQSSAQPPASSLPQYQYAS------QQSQQPSKPVRTGyEKYKEPEPIPDlqvdaslwGV 165

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  806 QPLYPIPMTPMPVNQAktyravpnmpQQRQDQHHQSTMM-------------HPASAAGPPIVATPPAYSTQYVAYSPQQ 872
Cdd:pfam09770  166 APKKAAAPAPAPQPAA----------QPASLPAPSRKMMsleeveaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQQ 235

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  873 FPNQPLVQHVPHYQSQHPhvysPVIQGNARMMA-----PPTHAQPGLVSSSATQYGAHEQTHAMYVSTGSLAQQYAHPNA 947
Cdd:pfam09770  236 FPPQIQQQQQPQQQPQQP----QQHPGQGHPVTilqrpQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSA 311

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1387216840  948 TLHPHTPHPQPSATPT-GQQQSQHGGSHPAPSPV 980
Cdd:pfam09770  312 ARVGYPQNPQPGVQPApAHQAHRQQGSFGRQAPI 345
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 764-877 1.19e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 45.95  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  764 SPRPQAQPSPS-MVGHQQPTPVYTQpvcfAPNMMYP-VPVSPGVQPLYPIPMTPMPVNQAKTYravPNMPQQRQDQHHQS 841
Cdd:TIGR01628  379 QPRMRQLPMGSpMGGAMGQPPYYGQ----GPQQQFNgQPLGWPRMSMMPTPMGPGGPLRPNGL---APMNAVRAPSRNAQ 451

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1387216840  842 TMMHPASAagPPIVATPPAYSTQyvaySPQQFPNQP 877
Cdd:TIGR01628  452 NAAQKPPM--QPVMYPPNYQSLP----LSQDLPQPQ 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
396-587 1.54e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.02  E-value: 1.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  396 QSGPNSLPPRAAT----PTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSI 471
Cdd:PRK12323   367 QSGGGAGPATAAAapvaQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  472 SSGLEFVSHTPPSEAAAPPTARTSPAGGTWSSV-VSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLASPQAGIIPAEAVAM 550
Cdd:PRK12323   447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAApARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1387216840  551 PVPAASPTPASPASNRAVTPSLEAKDSRLQDQRQNSP 587
Cdd:PRK12323   527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563
PHA03247 PHA03247
large tegument protein UL36; Provisional
 757-1030 1.86e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 1.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  757 KPSTTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPNMPQQRQd 836
Cdd:PHA03247  2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRR- 2666

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  837 qhhQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQHPHVYSPVIQGNARMMAPPTHAQPGLVS 916
Cdd:PHA03247  2667 ---ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPA 2743

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  917 SSATQygaheqthamyVSTGSLAQQyAHPNATLHPHTPHPqPSATPTGQQQSQhggshpAPSPVQHHQHQAAQALHLASP 996
Cdd:PHA03247  2744 VPAGP-----------ATPGGPARP-ARPPTTAGPPAPAP-PAAPAAGPPRRL------TRPAVASLSESRESLPSPWDP 2804

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1387216840  997 QQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAA 1030
Cdd:PHA03247  2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTA 2838
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 754-1024 2.12e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.46  E-value: 2.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  754 SQPKPSTTPTSPRPQAQPSPsmvGHQQPTPVYT-QPVCFAPNMMYPVPVSPGVQPLypipMTPMPVNQAKTYRAVPNMPQ 832
Cdd:PRK10263   345 PVASVDVPPAQPTVAWQPVP---GPQTGEPVIApAPEGYPQQSQYAQPAVQYNEPL----QQPVQPQQPYYAPAAEQPAQ 417

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  833 QRQDQHHQSTmmhPASAAGPPIVATPPAYSTQYVAYspqqfPNQPLVQHVPHYQSQHPHVySPVIQgNARMMAPPTHAQP 912
Cdd:PRK10263   418 QPYYAPAPEQ---PAQQPYYAPAPEQPVAGNAWQAE-----EQQSTFAPQSTYQTEQTYQ-QPAAQ-EPLYQQPQPVEQQ 487

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  913 GLVSSSATQYGAHEQTHAMYVSTgSLAQQYAHPNATLHP-HTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQAL 991
Cdd:PRK10263   488 PVVEPEPVVEETKPARPPLYYFE-EVEEKRAREREQLAAwYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLAS 566

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 1387216840  992 HLaspqqQSAIYHAGLAPTP--PSMTPASN-TQSPQ 1024
Cdd:PRK10263   567 GV-----KKATLATGAAATVaaPVFSLANSgGPRPQ 597
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 773-997 2.51e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.46  E-value: 2.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  773 PSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPgVQPLYPIPMTPMPVNQaktyravPNMPQQRQdqhhqstmmhPASAAGP 852
Cdd:PRK10263   309 PLLNGAPITEPVAVAAAATTATQSWAAPVEP-VTQTPPVASVDVPPAQ-------PTVAWQPV----------PGPQTGE 370

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  853 PIVATPPAystqyvAYSPQQFPNQPLVQHVPHYQSQHPHvyspviqgnarmmAPPTHAQPGLVSSSATQYGAHEQTHAMY 932
Cdd:PRK10263   371 PVIAPAPE------GYPQQSQYAQPAVQYNEPLQQPVQP-------------QQPYYAPAAEQPAQQPYYAPAPEQPAQQ 431

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1387216840  933 vstGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQ 997
Cdd:PRK10263   432 ---PYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 835-1057 5.15e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 44.26  E-value: 5.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  835 QDQHHQSTMMHPASAAGPPIVATPPAYSTQY-VAYSPQQFPNQPLVQHVPHYQSQHP----HVySPVIQGNA--RMMAPP 907
Cdd:pfam09770   96 EEEQVRFNRQQPAARAAQSSAQPPASSLPQYqYASQQSQQPSKPVRTGYEKYKEPEPipdlQV-DASLWGVApkKAAAPA 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  908 THAQPGLVSSSATQYG----------------AHEQTHAMYVSTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHG 971
Cdd:pfam09770  175 PAPQPAAQPASLPAPSrkmmsleeveaamraqAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQ 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  972 GSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPqNSFPAAQQTVFTIHPSHVQPAytnPPH 1051
Cdd:pfam09770  255 QHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNP-NRLSAARVGYPQNPQPGVQPA---PAH 330


                   ....*.
gi 1387216840 1052 MAHVPQ 1057
Cdd:pfam09770  331 QAHRQQ 336
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 737-893 5.31e-04

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 44.03  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  737 RKSTLNpnaKEFNPRSFSQPKPSTTptSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQ--PLYPIPMT 814
Cdd:TIGR01628  367 RRAHLQ---DQFMQLQPRMRQLPMG--SPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPlrPNGLAPMN 441

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  815 PMpvnqaktyRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQPLVQHVPHYQSQ------ 888
Cdd:TIGR01628  442 AV--------RAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQvlgerl 513


                   ....*
gi 1387216840  889 HPHVY 893
Cdd:TIGR01628  514 FPLVE 518
PHA03247 PHA03247
large tegument protein UL36; Provisional
 741-1064 5.43e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  741 LNPNAKEFNPRSFSQPKPSTTPTSPRPQAQ--PSPSMVG---------------------------------------HQ 779
Cdd:PHA03247  2624 PDPPPPSPSPAANEPDPHPPPTVPPPERPRddPAPGRVSrprrarrlgraaqassppqrprrraarptvgsltsladpPP 2703

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  780 QPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTyRAVPNMPQQRQDQHHQSTMMHPAS----AAGPPIV 855
Cdd:PHA03247  2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-PATPGGPARPARPPTTAGPPAPAPpaapAAGPPRR 2782

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  856 ATPPAYSTQYVAYSPQQFPNQPLVQHVPhyqSQHPHVYSPVIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYVST 935
Cdd:PHA03247  2783 LTRPAVASLSESRESLPSPWDPADPPAA---VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  936 GSLA------QQYAHPNATLHP---HTPHPQPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAG 1006
Cdd:PHA03247  2860 GDVRrrppsrSPAAKPAAPARPpvrRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840 1007 LAPTPPSMTPASNTQsPQNSFPAAQQTVFTIHPSHVqPAYTNPPHMAHVPQYKPTTNS 1064
Cdd:PHA03247  2940 QPPLAPTTDPAGAGE-PSGAVPQPWLGALVPGRVAV-PRFRVPQPAPSREAPASSTPP 2995
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 750-1057 1.61e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  750 PRSFSQPKPSTTPTSPRPQAQPSPSMVGHQQPTPvytqpvcfAPNMMYPVPVSPGVQPLYPIPMTPMPVNQAKTYRAVPN 829
Cdd:PRK07764   400 SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP--------APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  830 MPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPNQpLVQHVPHYQ-------SQHPHVYSpvIQGNAR 902
Cdd:PRK07764   472 AAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE-ILAAVPKRSrktwailLPEATVLG--VRGDTL 548

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  903 MMApptHAQPGLVSSSATQYGA-------HEQTHA-----MYVSTGSLAQQYAHPNA----TLHPHTPHPQPSATPTGQQ 966
Cdd:PRK07764   549 VLG---FSTGGLARRFASPGNAevlvtalAEELGGdwqveAVVGPAPGAAGGEGPPApassGPPEEAARPAAPAAPAAPA 625

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  967 QSQHGGSHPAPSPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAY 1046
Cdd:PRK07764   626 APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

                          330
                   ....*....|.
gi 1387216840 1047 TNPPHMAHVPQ 1057
Cdd:PRK07764   706 AATPPAGQADD 716
PAM2 pfam07145
Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various ...
 737-752 5.55e-03

Ataxin-2 C-terminal region; The PABP-interacting motif PAM2 has been identified in various eukaryotic proteins as an important binding site for pfam00658. It has been found in a wide range of eukaryotic proteins. Strikingly, this motif appears to occur solely outside of globular domains.


Pssm-ID: 429316  Cd Length: 17  Bit Score: 35.28  E-value: 5.55e-03
                           10
                   ....*....|....*.
gi 1387216840  737 RKSTLNPNAKEFNPRS 752
Cdd:pfam07145    1 SKSKLNPNAKEFVPSF 16
PHA03247 PHA03247
large tegument protein UL36; Provisional
 339-577 5.79e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  339 QNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRppsryqsgPNSLPPRAATPTRPPSRPPS 418
Cdd:PHA03247  2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHA--------PDPPPPSPSPAANEPDPHPP 2643

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  419 RPSRPPSHPSAHGSPAPVStMPKRMSSEGPPrmsPKAQRHPRNHRVSAGRGSISSGLEFVSHTPPSEAAAPPTARTSPAG 498
Cdd:PHA03247  2644 PTVPPPERPRDDPAPGRVS-RPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  499 GTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPV-LASPQAGIIPAEAVAMPVPAASPTPASPASnrAVTPSLEAKDS 577
Cdd:PHA03247  2720 PLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPArPARPPTTAGPPAPAPPAAPAAGPPRRLTRP--AVASLSESRES 2797
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 802-914 6.08e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 6.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  802 SPGVQPLYPiPMTPMPVNQAKTYRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYST--QYVAYSPQ-QFPNQPL 878
Cdd:PRK10263   746 TPIVEPVQQ-PQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQpqQPVAPQPQyQQPQQPV 824

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1387216840  879 VQHVPHYQSQHPHVYSP---------VIQGNARMMAPPTHAQPGL 914
Cdd:PRK10263   825 APQPQYQQPQQPVAPQPqdtllhpllMRNGDSRPLHKPTTPLPSL 869
PHA03247 PHA03247
large tegument protein UL36; Provisional
 394-571 6.36e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 6.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  394 RYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVS---------TMPKRMSSEGPPrmsPKAQRHPRNHRV 464
Cdd:PHA03247  2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddpapgrvSRPRRARRLGRA---AQASSPPQRPRR 2685

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1387216840  465 SAGRGSISSGLEFVSHTPPSEAAAPPTARTSPA-----------GGTWSSVVSGVPRLSPK-THRPRSPRQNSIGNTPSG 532
Cdd:PHA03247  2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSAtplppgpaaarQASPALPAAPAPPAVPAgPATPGGPARPARPPTTAG 2765

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 1387216840  533 PVLASPQAGIIPAEAVAMPVPAAS---------PTPASPASNRAVTPS 571
Cdd:PHA03247  2766 PPAPAPPAAPAAGPPRRLTRPAVAslsesreslPSPWDPADPPAAVLA 2813
Sm_like cd00600
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to ...
 100-167 7.71e-03

Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.


Pssm-ID: 212462 [Multi-domain]  Cd Length: 63  Bit Score: 36.07  E-value: 7.71e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1387216840  100 LTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTEsssgpKREEIMESILFKCSDFVVVQ 167
Cdd:cd00600      1 LKDFIGKTVSVELKDGRVLTGTLVAFDKYMNLVLDDVVETGRD-----GKVRVLGLVLIRGSNIVSIR 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH