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ATXN10 ataxin 10 [ Sus scrofa (pig) ]

Gene ID: 414389, updated on 5-Mar-2024

Summary

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Official Symbol
ATXN10provided by VGNC
Official Full Name
ataxin 10provided by VGNC
Primary source
VGNC:VGNC:85688
See related
Ensembl:ENSSSCG00000024864
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SCA10
Expression
Ubiquitous expression in ovary (RPKM 47.2), kidney (RPKM 31.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (3637794..3798204, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (809349..1027816, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260613 Neighboring gene Wnt family member 7B Neighboring gene uncharacterized LOC106510257 Neighboring gene fibulin 1 Neighboring gene uncharacterized LOC102160181

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-10
Names
spinocerbellar ataxia type 10 protein-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    3637794..3798204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013997462.2 → XP_013852916.2  ataxin-10 isoform X1

    UniProtKB/TrEMBL
    A0A480M0G4, A0A480ZZX1, A0A4X1W4J5, A0A5G2QWQ6, A0A8D0Y4D8
    Related
    ENSSSCP00000068580.2, ENSSSCT00000070263.2
    Conserved Domains (1) summary
    pfam09759
    Location:370 → 467
    Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain

  2. XM_021091386.1 → XP_020947045.1  ataxin-10 isoform X3

    UniProtKB/TrEMBL
    A0A4X1W4X3, A0A5G2R1F6, A0A8D1KI75
    Related
    ENSSSCP00000064352.2, ENSSSCT00000072203.2
    Conserved Domains (1) summary
    pfam09759
    Location:317 → 414
    Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain

  3. XM_013997463.2 → XP_013852917.2  ataxin-10 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VZ06, A0A8D0Y7Q6
    Related
    ENSSSCP00000026121.3, ENSSSCT00000023423.4
    Conserved Domains (1) summary
    pfam09759
    Location:343 → 440
    Atx10homo_assoc; Spinocerebellar ataxia type 10 protein domain
Nucleotide Protein
Heading Accession and Version

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