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ARID1A AT-rich interaction domain 1A [ Mauremys mutica (yellowpond turtle) ]

Gene ID: 123355289, updated on 22-Mar-2024

Summary

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Gene symbol
ARID1A
Gene description
AT-rich interaction domain 1A
Locus tag
KIL84_021666
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys mutica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
24
Annotation release Status Assembly Chr Location
100 current ASM2049712v1 (GCF_020497125.1) 23 NC_059094.1 (11705538..11840331, complement)

Chromosome 23 - NC_059094.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123355293 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene uncharacterized LOC123355248

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059094.1 Chromosome 23 Reference ASM2049712v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2049712v1 Primary Assembly

Genomic

  1. NC_059094.1 Reference ASM2049712v1 Primary Assembly

    Range
    11705538..11840331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044997603.1 → XP_044853538.1  AT-rich interactive domain-containing protein 1A isoform X2

    Conserved Domains (3) summary
    PHA03247
    Location:757 → 1297
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:320 → 420
    PRK10263; DNA translocase FtsK; Provisional
    cd16876
    Location:663 → 755
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  2. XM_044997607.1 → XP_044853542.1  AT-rich interactive domain-containing protein 1A isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:747 → 1287
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:310 → 410
    PRK10263; DNA translocase FtsK; Provisional
    cd16876
    Location:653 → 745
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  3. XM_044997604.1 → XP_044853539.1  AT-rich interactive domain-containing protein 1A isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:747 → 1287
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:310 → 410
    PRK10263; DNA translocase FtsK; Provisional
    cd16876
    Location:653 → 745
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  4. XM_044997605.1 → XP_044853540.1  AT-rich interactive domain-containing protein 1A isoform X3

    Conserved Domains (3) summary
    PHA03247
    Location:747 → 1287
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:310 → 410
    PRK10263; DNA translocase FtsK; Provisional
    cd16876
    Location:653 → 745
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  5. XM_044997602.1 → XP_044853537.1  AT-rich interactive domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A9D3X841
    Conserved Domains (3) summary
    PHA03247
    Location:1115 → 1655
    PHA03247; large tegument protein UL36; Provisional
    PRK10263
    Location:678 → 778
    PRK10263; DNA translocase FtsK; Provisional
    cd16876
    Location:1021 → 1113
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
Nucleotide Protein
Heading Accession and Version

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