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ALKBH5 alkB homolog 5, RNA demethylase [ Varanus komodoensis (Komodo dragon) ]

Gene ID: 123025073, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH5
Gene description
alkB homolog 5, RNA demethylase
Locus tag
EYD10_10570
See related
Ensembl:ENSVKKG00000017922
Gene type
protein coding
RefSeq status
MODEL
Organism
Varanus komodoensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335684.1 (1721176..1735740, complement)

NW_025335684.1Genomic Context describing neighboring genes Neighboring gene FLII actin remodeling protein Neighboring gene LLGL scribble cell polarity complex component 1 Neighboring gene uncharacterized LOC123025061 Neighboring gene developmentally regulated GTP binding protein 2 Neighboring gene GID complex subunit 4 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_025335684 Unplaced Scaffold Reference ASM479886v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidative RNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA demethylase ALKBH5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM479886v1

Genomic

  1. NW_025335684.1 Reference ASM479886v1

    Range
    1721176..1735740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044433531.1 → XP_044289466.1  RNA demethylase ALKBH5

    UniProtKB/TrEMBL
    A0A8D2LU11
    Related
    ENSVKKP00000027598.1, ENSVKKT00000028266.1
    Conserved Domains (1) summary
    cl21496
    Location:82 → 258
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_044433528.1 → XP_044289463.1  RNA demethylase ALKBH5

    UniProtKB/TrEMBL
    A0A8D2LU11
    Conserved Domains (1) summary
    cl21496
    Location:82 → 258
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_044433530.1 → XP_044289465.1  RNA demethylase ALKBH5

    UniProtKB/TrEMBL
    A0A8D2LU11
    Conserved Domains (1) summary
    cl21496
    Location:82 → 258
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_044433529.1 → XP_044289464.1  RNA demethylase ALKBH5

    UniProtKB/TrEMBL
    A0A8D2LU11
    Conserved Domains (1) summary
    cl21496
    Location:82 → 258
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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