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ARID1A AT-rich interaction domain 1A [ Oryx dammah (scimitar-horned oryx) ]

Gene ID: 120855028, updated on 21-Mar-2024

Summary

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Gene symbol
ARID1A
Gene description
AT-rich interaction domain 1A
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryx dammah
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Oryx
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current SCBI_Odam_1.1 (GCF_014754425.2) Unplaced Scaffold NW_024070211.1 (9563768..9632551)

NW_024070211.1Genomic Context describing neighboring genes Neighboring gene dehydrodolichyl diphosphate synthase subunit Neighboring gene uncharacterized LOC120855105 Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene zinc finger DHHC-type palmitoyltransferase 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024070211 Unplaced Scaffold Reference SCBI_Odam_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryx dammah Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SCBI_Odam_1.1 Primary Assembly

Genomic

  1. NW_024070211.1 Reference SCBI_Odam_1.1 Primary Assembly

    Range
    9563768..9632551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040229560.1 → XP_040085494.1  AT-rich interactive domain-containing protein 1A isoform X1

    Conserved Domains (3) summary
    TIGR01628
    Location:375 → 472
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam09606
    Location:680 → 951
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1022 → 1114
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  2. XM_040229562.1 → XP_040085496.1  AT-rich interactive domain-containing protein 1A isoform X3

    Conserved Domains (3) summary
    TIGR01628
    Location:375 → 472
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam09606
    Location:680 → 951
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1022 → 1114
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  3. XM_040229563.1 → XP_040085497.1  AT-rich interactive domain-containing protein 1A isoform X4

    Conserved Domains (4) summary
    TIGR01628
    Location:375 → 472
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:601 → 732
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:716 → 950
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1021 → 1113
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins

  4. XM_040229561.1 → XP_040085495.1  AT-rich interactive domain-containing protein 1A isoform X2

    Conserved Domains (4) summary
    TIGR01628
    Location:375 → 472
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:601 → 732
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:716 → 950
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1021 → 1113
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
Nucleotide Protein
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