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ARID1A AT-rich interaction domain 1A [ Balaenoptera musculus (blue whale) ]

Gene ID: 118891247, updated on 20-Mar-2024

Summary

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Gene symbol
ARID1A
Gene description
AT-rich interaction domain 1A
See related
EnsemblRapid:ENSBMSG00010006900
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
100 current mBalMus1.pri.v3 (GCF_009873245.2) 1 NC_045785.1 (20863370..20933789)

Chromosome 1 - NC_045785.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L18-like Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene 60S ribosomal protein L5-like Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045785.1 Chromosome 1 Reference mBalMus1.pri.v3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalMus1.pri.v3 Primary Assembly

Genomic

  1. NC_045785.1 Reference mBalMus1.pri.v3 Primary Assembly

    Range
    20863370..20933789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036844997.1 → XP_036700892.1  AT-rich interactive domain-containing protein 1A isoform X2

    UniProtKB/TrEMBL
    A0A8B8WU89, A0A8C0CPT0
    Related
    ENSBMSP00010009384.1, ENSBMST00010010447.2
    Conserved Domains (5) summary
    TIGR01628
    Location:372 → 469
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:598 → 729
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:713 → 947
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1018 → 1110
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1978 → 2233
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  2. XM_036844990.1 → XP_036700885.1  AT-rich interactive domain-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0A8B8WY81, A0A8C0CPT0
    Related
    ENSBMSP00010009388.1, ENSBMST00010010451.2
    Conserved Domains (5) summary
    TIGR01628
    Location:372 → 469
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:598 → 729
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:713 → 947
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1018 → 1110
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1977 → 2232
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  3. XM_036845003.1 → XP_036700898.1  AT-rich interactive domain-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0A8B8WUC4, A0A8C0CPT0
    Conserved Domains (4) summary
    TIGR01628
    Location:372 → 469
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam09606
    Location:641 → 897
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:968 → 1060
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1928 → 2183
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  4. XM_036845012.1 → XP_036700907.1  AT-rich interactive domain-containing protein 1A isoform X4

    UniProtKB/TrEMBL
    A0A8B8WUA4
    Conserved Domains (4) summary
    PRK07764
    Location:162 → 293
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:241 → 511
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:582 → 674
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1542 → 1797
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
Nucleotide Protein
Heading Accession and Version

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