U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARID1A AT-rich interaction domain 1A [ Mirounga leonina (Southern elephant seal) ]

Gene ID: 118019833, updated on 20-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ARID1A
Gene description
AT-rich interaction domain 1A
Locus tag
GH733_015661
See related
EnsemblRapid:ENSMLOG00005005355
Gene type
protein coding
RefSeq status
MODEL
Organism
Mirounga leonina
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Mirounga
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current KU_Mleo_1.0 (GCF_011800145.1) Unplaced Scaffold NW_023270447.1 (74319058..74387954, complement)

NW_023270447.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118019830 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene ribosomal protein S6 kinase A1 Neighboring gene cytochrome b-c1 complex subunit 8-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_023270447 Unplaced Scaffold Reference KU_Mleo_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of brahma complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nBAF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AT-rich interactive domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mirounga leonina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KU_Mleo_1.0 Primary Assembly

Genomic

  1. NW_023270447.1 Reference KU_Mleo_1.0 Primary Assembly

    Range
    74319058..74387954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035019399.1 → XP_034875290.1  AT-rich interactive domain-containing protein 1A isoform X1

    Conserved Domains (4) summary
    TIGR01628
    Location:373 → 470
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam09606
    Location:678 → 949
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1020 → 1112
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1974 → 2229
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  2. XM_035019402.1 → XP_034875293.1  AT-rich interactive domain-containing protein 1A isoform X4

    Related
    ENSMLOP00005007766.1, ENSMLOT00005008875.1
    Conserved Domains (5) summary
    TIGR01628
    Location:373 → 470
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:599 → 730
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:714 → 948
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1019 → 1111
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1972 → 2227
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  3. XM_035019401.1 → XP_034875292.1  AT-rich interactive domain-containing protein 1A isoform X3

    Conserved Domains (4) summary
    TIGR01628
    Location:373 → 470
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam09606
    Location:678 → 949
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1020 → 1112
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1973 → 2228
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

  4. XM_035019400.1 → XP_034875291.1  AT-rich interactive domain-containing protein 1A isoform X2

    Related
    ENSMLOP00005007737.1, ENSMLOT00005008845.1
    Conserved Domains (5) summary
    TIGR01628
    Location:373 → 470
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    PRK07764
    Location:599 → 730
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:714 → 948
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16876
    Location:1019 → 1111
    ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
    pfam12031
    Location:1973 → 2228
    BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.