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ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 [ Empidonax traillii (willow flycatcher) ]

Gene ID: 114059949, updated on 15-Mar-2024

Summary

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Gene symbol
ARIH1
Gene description
ariadne RBR E3 ubiquitin protein ligase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Empidonax traillii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Empidonax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955205.1 (1611644..1662138, complement)

NW_020955205.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114059943 Neighboring gene ADP dependent glucokinase Neighboring gene Bardet-Biedl syndrome 4 Neighboring gene hexosaminidase subunit alpha Neighboring gene CUGBP Elav-like family member 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020955205 Unplaced Scaffold Reference ASM303162v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase ARIH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM303162v1

Genomic

  1. NW_020955205.1 Reference ASM303162v1

    Range
    1611644..1662138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027889053.1 → XP_027744854.1  E3 ubiquitin-protein ligase ARIH1 isoform X7

    Conserved Domains (2) summary
    smart00647
    Location:253 → 313
    IBR; In Between Ring fingers
    cd16626
    Location:182 → 238
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins

  2. XM_027889008.1 → XP_027744809.1  E3 ubiquitin-protein ligase ARIH1 isoform X2

  3. XM_027889046.1 → XP_027744847.1  E3 ubiquitin-protein ligase ARIH1 isoform X6

  4. XM_027888997.1 → XP_027744798.1  E3 ubiquitin-protein ligase ARIH1 isoform X1

  5. XM_027889027.1 → XP_027744828.1  E3 ubiquitin-protein ligase ARIH1 isoform X4

    Conserved Domains (3) summary
    smart00647
    Location:253 → 313
    IBR; In Between Ring fingers
    cd16626
    Location:182 → 238
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:335 → 375
    IBR; IBR domain, a half RING-finger domain

  6. XM_027889017.1 → XP_027744818.1  E3 ubiquitin-protein ligase ARIH1 isoform X3

  7. XM_027889036.1 → XP_027744837.1  E3 ubiquitin-protein ligase ARIH1 isoform X5

    Conserved Domains (3) summary
    smart00647
    Location:253 → 313
    IBR; In Between Ring fingers
    cd16626
    Location:182 → 238
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:335 → 375
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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