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ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 [ Lonchura striata domestica (Bengalese finch) ]

Gene ID: 110472581, updated on 15-Mar-2024

Summary

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Gene symbol
ADAMTS6
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 6
Locus tag
RLOC_00012642
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata domestica (sub-species: domestica)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
ADAMTS6_0; ADAMTS6_1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Z
Exon count:
25
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) Z NC_042595.1 (45672600..45817890, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018656281.1 (3556178..3701129, complement)

Chromosome Z - NC_042595.1Genomic Context describing neighboring genes Neighboring gene SREK1 interacting protein 1 Neighboring gene CWC27 spliceosome associated cyclophilin Neighboring gene centromere protein K Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042595.1 Reference lonStrDom2 Primary Assembly

    Range
    45672600..45817890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021534377.2 → XP_021390052.1  A disintegrin and metalloproteinase with thrombospondin motifs 6

    Conserved Domains (6) summary
    smart00209
    Location:563 → 615
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:252 → 467
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01562
    Location:43 → 191
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:719 → 831
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1085 → 1117
    PLAC; PLAC (protease and lacunin) domain
    pfam17771
    Location:482 → 550
    ADAM_CR_2; ADAM cysteine-rich domain
Nucleotide Protein
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