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LonStrDom1

Organism name:
Lonchura striata domestica (Bengalese finch)
Isolate:
white83orange57
BioSample:
SAMN06283872
BioProject:
PRJNA369279
Submitter:
HHMI/UCSF
Date:
2017/06/19
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_002197715.1 (latest)
RefSeq assembly accession:
GCF_002197715.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 2 unlocalized scaffolds on chromosome MT
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
MUZQ01
Assembly method:
ALLPATHS-LG v. JAN-2015
Expected final version:
yes
Genome coverage:
142.0x
Sequencing technology:
Illumina

IDs: 1135041 [UID] 4608628 [GenBank] 4627768 [RefSeq]

See Genome Information for Lonchura striata

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,060,169,204
Total ungapped length1,029,017,788
Gaps between scaffolds0
Number of scaffolds3,015
Scaffold N502,953,339
Scaffold L50103
Number of contigs33,370
Contig N50100,439
Contig L502,867
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)3,015

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,060,152,8933,0131,029,001,4772,953,33930,3550
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds16,311016,31120216,311016,3118,35508,355000000