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AFF4 ALF transcription elongation factor 4 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101926415, updated on 8-Mar-2024

Summary

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Gene symbol
AFF4
Gene description
ALF transcription elongation factor 4
See related
Ensembl:ENSMFAG00000034615
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
22
Annotation release Status Assembly Chr Location
102 current MFA1912RKSv2 (GCF_012559485.2) 6 NC_052260.1 (128030746..128120074, complement)
101 previous assembly Macaca_fascicularis_5.0 (GCF_000364345.1) 6 NC_022277.1 (131866897..131957119, complement)

Chromosome 6 - NC_052260.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 8 Neighboring gene liver enriched antimicrobial peptide 2 Neighboring gene V-type proton ATPase subunit e 1-like Neighboring gene uncharacterized LOC102133690 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene zinc finger CCHC-type containing 10 Neighboring gene heat shock protein family A (Hsp70) member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca fascicularis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MFA1912RKSv2 Primary Assembly

Genomic

  1. NC_052260.1 Reference MFA1912RKSv2 Primary Assembly

    Range
    128030746..128120074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015451879.2 → XP_015307365.1  AF4/FMR2 family member 4 isoform X2

    UniProtKB/TrEMBL
    G7P895
    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1129
    AF-4; AF-4 proto-oncoprotein

  2. XM_005557757.3 → XP_005557814.1  AF4/FMR2 family member 4 isoform X1

    See identical proteins and their annotated locations for XP_005557814.1

    UniProtKB/TrEMBL
    G7P895
    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1158
    AF-4; AF-4 proto-oncoprotein

  3. XM_015451878.2 → XP_015307364.1  AF4/FMR2 family member 4 isoform X1

    UniProtKB/TrEMBL
    G7P895
    Related
    ENSMFAP00000036638.1
    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1158
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
Heading Accession and Version

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