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ABLIM1 actin binding LIM protein 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101925236, updated on 3-Apr-2024

Summary

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Gene symbol
ABLIM1
Gene description
actin binding LIM protein 1
See related
Ensembl:ENSMFAG00000046222
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
102 current MFA1912RKSv2 (GCF_012559485.2) 9 NC_052263.1 (110124500..110462614, complement)
101 previous assembly Macaca_fascicularis_5.0 (GCF_000364345.1) 9 NC_022280.1 (113633787..114025548, complement)

Chromosome 9 - NC_052263.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor A domain containing 2 Neighboring gene actin filament associated protein 1 like 2 Neighboring gene small nucleolar RNA U13 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC123566912 Neighboring gene FHF complex subunit HOOK interacting protein 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca fascicularis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MFA1912RKSv2 Primary Assembly

Genomic

  1. NC_052263.1 Reference MFA1912RKSv2 Primary Assembly

    Range
    110124500..110462614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015456731.2 → XP_015312217.1  actin-binding LIM protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2K5WTG4
    Conserved Domains (6) summary
    smart00153
    Location:736 → 771
    VHP; Villin headpiece domain
    cd09327
    Location:22 → 73
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:78 → 133
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:149 → 200
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:208 → 263
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:301 → 735
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_045362235.1 → XP_045218170.1  actin-binding LIM protein 1 isoform X4

    Conserved Domains (5) summary
    smart00153
    Location:661 → 696
    VHP; Villin headpiece domain
    cd09328
    Location:3 → 58
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:74 → 125
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:133 → 188
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam16182
    Location:225 → 660
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  3. XM_045362237.1 → XP_045218172.1  actin-binding LIM protein 1 isoform X6

  4. XM_045362236.1 → XP_045218171.1  actin-binding LIM protein 1 isoform X5

  5. XM_005566501.3 → XP_005566558.2  actin-binding LIM protein 1 isoform X3

  6. XM_015456729.2 → XP_015312215.2  actin-binding LIM protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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