2DJ7


Conserved Protein Domain Family
LIM3_abLIM

?
cd09329: LIM3_abLIM 
Click on image for an interactive view with Cn3D
The third LIM domain of actin binding LIM (abLIM) proteins
The third LIM domain of actin binding LIM (abLIM) proteins: Three homologous members of the abLIM protein family have been identified; abLIM-1, abLIM-2 and abLIM-3. The N-terminal of abLIM consists of four tandem repeats of LIM domains and the C-terminal of acting binding LIM protein is a villin headpiece domain, which has strong actin binding activity. The abLIM-1, which is expressed in retina, brain, and muscle tissue, has been indicated to function as a tumor suppressor. AbLIM-2 and -3, mainly expressed in muscle and neuronal tissue, bind to F-actin strongly. They may serve as a scaffold for signaling modules of the actin cytoskeleton and thereby modulate transcription. It has shown that LIM domains of abLIMs interact with STARS (striated muscle activator of Rho signaling), which directly binds actin and stimulates serum-response factor (SRF)-dependent transcription. All LIM domains are 50-60 amino acids in size and share two characteristic highly conserved zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
?
PSSM-Id: 188715
Aligned: 19 rows
Threshold Bit Score: 93.5377
Created: 7-May-2010
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2DJ7_A: Human abLIM LIM3 domain binds Zn
    View structure with Cn3D
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #                 #  #  #  #                #  # 
2DJ7_A         18 CAGCKEEIkhGQSLLALDKQWHVSCFKCQTCSVILtGEYISKDGVPYCESDY 69   human
CAX14403      149 CAGCKEEIkqGQSLLALEKQWHVSCFRCQTCGLVLtGEYISKDGVPYCESDY 200  zebrafish
NP_001152835  160 CAGCGRDIknGQALLALDKQWHLGCFKCKACGKVLtGEYISKDGAPYCEKDY 211  chicken
XP_002114647  190 CGGCQKEIedYHGIFALEQQWHPSCFKCHHCGKLLnEDYAGRNRKPYCLDDF 241  Trichoplax adhaerens
XP_002157679  140 CAGCHNVIksGQALLALEKQWHLWCFSCFKCGCLLaGEYMGRNGVPYCEQDY 191  green hydra
NP_001087805  153 CGGCGLEIknGQSLVALEKHWHLGCFKCKTCGTPLkAEYISKDGIPYCEMDY 204  African clawed frog
XP_002603771   60 CAGCGDEIksGQALLALDKQWHLWCFKCTQCGCMLaGEYMGKEGRPYCERDY 111  Florida lancelet
XP_001635264  150 CAGCGEAIkgSQALLALEKQWHLWCFSCTKCHCLLsLEYMGMDGKPYCEKDY 201  starlet sea anemone
Q8K4G5        226 CAGCGRDIknGQALLALDKQWHLGCFKCKSCGKVLtGEYISKDGSPYCEKDY 277  house mouse
EAW82358       24 CGGCGTEIknGQALVALDKHWHLGCFKCKSCGKLLnAEYISKDGLPYCEADY 75   human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap