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Gm21054 predicted gene, 21054 [ Mus musculus (house mouse) ]

Gene ID: 100846987, updated on 8-Feb-2024

Summary

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Official Symbol
Gm21054provided by MGI
Official Full Name
predicted gene, 21054provided by MGI
Gene description
POU domain, class 5, transcription factor 1 pseudogene
Primary source
MGI:MGI:5434411
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Otf3e; Oct4P5; Otf3-rs5; Pou5f1-rs5
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Genomic context

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See Gm21054 in Genome Data Viewer
Location:
6 E1; 6
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (103940996..103941645, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (103964035..103964684, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule L1-like Neighboring gene predicted gene, 52915 Neighboring gene STARR-seq mESC enhancer starr_16916 Neighboring gene STARR-seq mESC enhancer starr_16917 Neighboring gene predicted gene, 25656 Neighboring gene STARR-seq mESC enhancer starr_16918 Neighboring gene STARR-seq mESC enhancer starr_16919 Neighboring gene STARR-seq mESC enhancer starr_16920 Neighboring gene STARR-seq mESC enhancer starr_16921 Neighboring gene STARR-seq mESC enhancer starr_16922 Neighboring gene STARR-seq mESC enhancer starr_16923 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene contactin 6 Neighboring gene predicted gene, 38871

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA. Scarola M, et al. Nat Commun, 2015 Jul 9. PMID 26158551, Free PMC Article
  2. Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Siracusa LD, et al. Genomics, 1991 Jun. PMID 1676977

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • POU domain, class 5, transcription factor 1 pseudogene
  • POU domain, class 5, transcription factor 1, related sequence 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144494.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC113025

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    103940996..103941645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_030589.1: Suppressed sequence

    Description
    NG_030589.1: This RefSeq was removed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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