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AFF2 ALF transcription elongation factor 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100580859, updated on 8-Mar-2024

Summary

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Gene symbol
AFF2
Gene description
ALF transcription elongation factor 2
See related
EnsemblRapid:ENSNLEG00000013346
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
21
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) X NC_044406.1 (133712923..134231387)
102 previous assembly Nleu_3.0 (GCF_000146795.2) X NC_019841.1 (134529553..135065584)

Chromosome X - NC_044406.1Genomic Context describing neighboring genes Neighboring gene HCLS1-associated protein X-1-like Neighboring gene 60S ribosomal protein L7-like 1 pseudogene Neighboring gene iduronate 2-sulfatase-like Neighboring gene iduronate 2-sulfatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044406.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    133712923..134231387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003271824.3 → XP_003271872.1  AF4/FMR2 family member 2 isoform X3

    UniProtKB/TrEMBL
    G1RSS3
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1298
    AF-4; AF-4 proto-oncoprotein

  2. XM_003271823.3 → XP_003271871.1  AF4/FMR2 family member 2 isoform X2

    UniProtKB/TrEMBL
    G1RSS3
    Related
    ENSNLEP00000016297.1, ENSNLET00000017131.3
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1269
    AF-4; AF-4 proto-oncoprotein

  3. XM_012498708.2 → XP_012354162.1  AF4/FMR2 family member 2 isoform X1

    UniProtKB/TrEMBL
    A0A2I3HAG9, G1RSS3
    Related
    ENSNLEP00000040639.1, ENSNLET00000046946.2
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1273
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
Heading Accession and Version

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