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alx4 ALX homeobox 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100493396, updated on 8-Mar-2024

Summary

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Official Symbol
alx4provided by Xenbase
Official Full Name
ALX homeobox 4provided by Xenbase
Primary source
Xenbase:XB-GENE-853003
See related
Ensembl:ENSXETG00000007545
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fnd2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (10563032..10609040)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (3749142..3800435)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene tetraspanin 18 Neighboring gene CD82 molecule Neighboring gene exostosin glycosyltransferase 2 Neighboring gene intraflagellar transport associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene. McGonnell IM, et al. Evol Dev, 2011 Jul-Aug. PMID 21740507, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
homeobox protein aristaless-like 4
Names
aristaless-like homeobox 4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    10563032..10609040
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004913349.4 → XP_004913406.1  homeobox protein aristaless-like 4

    See identical proteins and their annotated locations for XP_004913406.1

    UniProtKB/TrEMBL
    F6Q1D5, G1BEM1
    Related
    ENSXETP00000116281.1, ENSXETT00000105326.1
    Conserved Domains (3) summary
    COG5576
    Location:120 → 266
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:185 → 238
    Homeobox; Homeobox domain
    pfam03826
    Location:352 → 370
    OAR; OAR domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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