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atxn2 ataxin 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100490147, updated on 8-Mar-2024

Summary

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Official Symbol
atxn2provided by Xenbase
Official Full Name
ataxin 2provided by Xenbase
Primary source
Xenbase:XB-GENE-920190
See related
Ensembl:ENSXETG00000020912
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (163096838..163149405)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (154445928..154499621)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase family member 10 Neighboring gene BRCA1 associated protein Neighboring gene SH2B adaptor protein 3 Neighboring gene PH domain containing endocytic trafficking adaptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ataxin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    163096838..163149405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002937696.5 → XP_002937742.3  ataxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8R7Q1, A0A8J0QT23
    Related
    ENSXETP00000088708.2, ENSXETT00000071619.2
    Conserved Domains (7) summary
    PHA03247
    Location:364 → 746
    PHA03247; large tegument protein UL36; Provisional
    PHA03378
    Location:702 → 944
    PHA03378; EBNA-3B; Provisional
    COG5180
    Location:139 → 290
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK14971
    Location:450 → 591
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam06741
    Location:200 → 261
    LsmAD; LsmAD domain
    pfam14438
    Location:53 → 126
    SM-ATX; Ataxin 2 SM domain
    cl41729
    Location:935 → 1046
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  2. XM_018090560.2 → XP_017946049.2  ataxin-2 isoform X3

    UniProtKB/TrEMBL
    A0A6I8SIT3, A0A6I8SPK9
    Related
    ENSXETP00000095087.2, ENSXETT00000071257.2
    Conserved Domains (5) summary
    PHA03247
    Location:364 → 746
    PHA03247; large tegument protein UL36; Provisional
    PHA03378
    Location:702 → 944
    PHA03378; EBNA-3B; Provisional
    COG5180
    Location:139 → 290
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:200 → 261
    LsmAD; LsmAD domain
    pfam14438
    Location:53 → 126
    SM-ATX; Ataxin 2 SM domain

  3. XM_004910507.4 → XP_004910564.2  ataxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A6I8R7Q1, A0A8J0QWY2
    Conserved Domains (6) summary
    PHA03247
    Location:364 → 833
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:139 → 290
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    PRK10263
    Location:736 → 950
    PRK10263; DNA translocase FtsK; Provisional
    pfam06741
    Location:200 → 261
    LsmAD; LsmAD domain
    pfam14438
    Location:53 → 126
    SM-ATX; Ataxin 2 SM domain
    cl41729
    Location:933 → 1044
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

  4. XM_004910508.4 → XP_004910565.2  ataxin-2 isoform X4

    UniProtKB/TrEMBL
    A0A6I8R7Q1, A0A8J0QUW2
    Conserved Domains (5) summary
    PHA03247
    Location:408 → 785
    PHA03247; large tegument protein UL36; Provisional
    COG5180
    Location:139 → 290
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam06741
    Location:200 → 261
    LsmAD; LsmAD domain
    pfam14438
    Location:53 → 126
    SM-ATX; Ataxin 2 SM domain
    cl41729
    Location:865 → 976
    KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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