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aff2 AF4/FMR2 family member 2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100487096, updated on 8-Mar-2024

Summary

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Official Symbol
aff2provided by Xenbase
Official Full Name
AF4/FMR2 family member 2provided by Xenbase
Primary source
Xenbase:XB-GENE-952102
See related
Ensembl:ENSXETG00000019630
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
FMR2; MRX2; OX19; FMR-2; FMR2P; FRAXE; XLID109
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (57084440..57417127)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (35896103..36240256)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene SLIT and NTRK like family member 2 Neighboring gene fragile X messenger ribonucleoprotein 1 Neighboring gene transmembrane protein 185A Neighboring gene iduronate 2-sulfatase Neighboring gene uncharacterized LOC116406926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables G-quadruplex RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nuclear speck IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
NOT part_of super elongation complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    57084440..57417127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002934547.5 → XP_002934593.2  AF4/FMR2 family member 2

    UniProtKB/TrEMBL
    F6WY12
    Related
    ENSXETP00000042503.5, ENSXETT00000042503.5
    Conserved Domains (2) summary
    pfam05110
    Location:19 → 1253
    AF-4; AF-4 proto-oncoprotein
    pfam09309
    Location:646 → 715
    FCP1_C; FCP1, C-terminal
Nucleotide Protein Strain
Heading Accession and Version

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