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Pou5f1-rs9 POU domain, class 5, transcription factor 1, related sequence 9 [ Mus musculus (house mouse) ]

Gene ID: 100417948, updated on 8-Feb-2024

Summary

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Official Symbol
Pou5f1-rs9provided by MGI
Official Full Name
POU domain, class 5, transcription factor 1, related sequence 9provided by MGI
Primary source
MGI:MGI:101885
See related
AllianceGenome:MGI:101885
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm18915; Oct4-rs9; Otf3-rs9
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Genomic context

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See Pou5f1-rs9 in Genome Data Viewer
Location:
9 A5.2; 9 25.36 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (46072324..46073244)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (46161026..46161946)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 Neighboring gene STARR-positive B cell enhancer ABC_E8289 Neighboring gene STARR-seq mESC enhancer starr_24013 Neighboring gene STARR-seq mESC enhancer starr_24014 Neighboring gene predicted gene, 46110 Neighboring gene SIK family kinase 3 Neighboring gene STARR-seq mESC enhancer starr_24018 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:45928283-45928392 Neighboring gene STARR-seq mESC enhancer starr_24022 Neighboring gene apolipoprotein A-I Neighboring gene apolipoprotein C-III

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure, expression and chromosomal location of the Oct-4 gene. Yeom YI, et al. Mech Dev, 1991 Nov. PMID 1768618

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • POU domain, class 5, transcription factor 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_020980.1 

    Range
    101..1021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    46072324..46073244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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