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AQP4 aquaporin 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100409781, updated on 8-Mar-2024

Summary

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Gene symbol
AQP4
Gene description
aquaporin 4
See related
Ensembl:ENSCJAG00000020734
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 13 NC_071454.1 (65122115..65137094, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 13 NC_048395.1 (66208648..66223634, complement)

Chromosome 13 - NC_071454.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103787605 Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene acidic leucine-rich nuclear phosphoprotein 32 family member B-like Neighboring gene carbohydrate sulfotransferase 9 Neighboring gene proliferation-associated protein 2G4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Increased expression of aquaporin-4 with methylmercury exposure in the brain of the common marmoset. Yamamoto M, et al. J Toxicol Sci, 2012. PMID 22863855
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables water channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aquaporin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071454.1 Reference mCalJa1.2.pat.X

    Range
    65122115..65137094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002757138.7 → XP_002757184.1  aquaporin-4 isoform X2

    See identical proteins and their annotated locations for XP_002757184.1

    UniProtKB/TrEMBL
    F7I6X5, F7IQC1, U3E3H0
    Related
    ENSCJAP00000023226.2
    Conserved Domains (1) summary
    pfam00230
    Location:31 → 248
    MIP; Major intrinsic protein

  2. XM_008979641.4 → XP_008977889.1  aquaporin-4 isoform X1

    UniProtKB/TrEMBL
    F7I6W3, F7I6X5, F7IQC1
    Conserved Domains (1) summary
    pfam00230
    Location:66 → 283
    MIP; Major intrinsic protein

  3. XM_035270788.2 → XP_035126679.1  aquaporin-4 isoform X3

    UniProtKB/TrEMBL
    A0A5F4VRA4, F7I6X5, F7IQC1
    Conserved Domains (1) summary
    pfam00230
    Location:9 → 226
    MIP; Major intrinsic protein
Nucleotide Protein
Heading Accession and Version

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