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AFF2 ALF transcription elongation factor 2 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100356143, updated on 3-Apr-2024

Summary

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Gene symbol
AFF2
Gene description
ALF transcription elongation factor 2
See related
Ensembl:ENSOCUG00000013873
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259152.1 (12040159..12635886)

NW_026259152.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127487113 Neighboring gene derlin-2-like Neighboring gene uncharacterized LOC127487104 Neighboring gene uncharacterized LOC127487103 Neighboring gene iduronate 2-sulfatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259152 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259152.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    12040159..12635886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051831606.1 → XP_051687566.1  AF4/FMR2 family member 2 isoform X1

  2. XM_051831607.1 → XP_051687567.1  AF4/FMR2 family member 2 isoform X3

  3. XM_008273461.3 → XP_008271683.1  AF4/FMR2 family member 2 isoform X2

    UniProtKB/TrEMBL
    A0A5F9CXC1
    Related
    ENSOCUP00000011943.3
    Conserved Domains (1) summary
    pfam05110
    Location:19 → 1295
    AF-4; AF-4 proto-oncoprotein

  4. XM_051831608.1 → XP_051687568.1  AF4/FMR2 family member 2 isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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