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ankrd12 ankyrin repeat domain 12 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100170448, updated on 8-Mar-2024

Summary

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Official Symbol
ankrd12provided by Xenbase
Official Full Name
ankyrin repeat domain 12provided by Xenbase
Primary source
Xenbase:XB-GENE-5860751
See related
Ensembl:ENSXETG00000004049
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (104488198..104553601)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (89353682..89401278)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 Neighboring gene uncharacterized LOC116411495 Neighboring gene twisted gastrulation BMP signaling modulator 1 Neighboring gene ralA binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130222.2 → NP_001123694.2  ankyrin repeat domain-containing protein 12

    Status: VALIDATED

    Source sequence(s)
    AAMC03024255
    UniProtKB/TrEMBL
    A0A6I8RPF2, A0A8J0QDI7
    Related
    ENSXETP00000087001.2, ENSXETT00000093384.2
    Conserved Domains (4) summary
    PTZ00121
    Location:694 → 1031
    PTZ00121; MAEBL; Provisional
    COG0666
    Location:91 → 279
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:162 → 193
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:167 → 252
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    104488198..104553601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903242.1 → XP_031759102.1  ankyrin repeat domain-containing protein 12 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PLR7, A0A6I8RPF2
    Related
    ENSXETP00000055075.3, ENSXETT00000055075.4
    Conserved Domains (4) summary
    PTZ00121
    Location:716 → 1053
    PTZ00121; MAEBL; Provisional
    COG0666
    Location:113 → 301
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:184 → 215
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:189 → 274
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_031903243.1 → XP_031759103.1  ankyrin repeat domain-containing protein 12 isoform X2

    UniProtKB/TrEMBL
    A0A6I8RPF2, A0A8J1JMJ4
    Conserved Domains (3) summary
    PTZ00121
    Location:580 → 917
    PTZ00121; MAEBL; Provisional
    sd00045
    Location:48 → 79
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:53 → 138
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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