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ABCA9 ATP binding cassette subfamily A member 9 [ Equus caballus (horse) ]

Gene ID: 100062524, updated on 8-Mar-2024

Summary

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Official Symbol
ABCA9provided by VGNC
Official Full Name
ATP binding cassette subfamily A member 9provided by VGNC
Primary source
VGNC:VGNC:14906
See related
Ensembl:ENSECAG00000022556
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
39
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (11779124..11843402)
102 previous assembly EquCab2.0 (GCF_000002305.2) 11 NC_009154.2 (11789171..11853404)

Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene spindle and kinetochore-associated protein 1 pseudogene Neighboring gene ATP binding cassette subfamily A member 6 Neighboring gene uncharacterized LOC106783075 Neighboring gene ATP binding cassette subfamily A member 8 Neighboring gene uncharacterized LOC111775604

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 9
Names
ATP-binding cassette, sub-family A (ABC1), member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009154.3 Reference EquCab3.0 Primary Assembly

    Range
    11779124..11843402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001916991.4 → XP_001917026.1  ATP-binding cassette sub-family A member 9 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H8Q4, A0A5K1VMA3
    Conserved Domains (1) summary
    cl28181
    Location:236 → 1600
    AAA; ATPases associated with a variety of cellular activities

  2. XM_014739162.2 → XP_014594648.1  ATP-binding cassette sub-family A member 9 isoform X2

    UniProtKB/TrEMBL
    A0A5K1VMA3, F6TR54
    Related
    ENSECAP00000020769.4, ENSECAT00000024978.4
    Conserved Domains (6) summary
    cd03263
    Location:1264 → 1471
    ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    COG1131
    Location:1243 → 1562
    CcmA; ABC-type multidrug transport system, ATPase component [Defense mechanisms]
    pfam12698
    Location:237 → 408
    ABC2_membrane_3; ABC-2 family transporter protein
    cl00465
    Location:258 → 345
    UPF0118; Domain of unknown function DUF20
    cl21455
    Location:502 → 668
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    cl21474
    Location:997 → 1112
    ABC2_membrane; ABC-2 type transporter

  3. XM_023652147.1 → XP_023507915.1  ATP-binding cassette sub-family A member 9 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H8Q4, A0A5K1VMA3
    Related
    ENSECAP00000030393.2, ENSECAT00000058820.2
    Conserved Domains (1) summary
    cl28181
    Location:236 → 1600
    AAA; ATPases associated with a variety of cellular activities
Nucleotide Protein
Heading Accession and Version

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