Conserved Protein Domain Family
ABC_subfamily_A

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cd03263: ABC_subfamily_A 
ATP-binding cassette domain of the lipid transporters, subfamily A
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Statistics
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PSSM-Id: 213230
Aligned: 56 rows
Threshold Bit Score: 218.913
Created: 26-Jan-2005
Updated: 2-Oct-2020
Structure
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Aligned Rows:
  next features
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:Walker A, Walker B, Q-loop, D-loop, and H-loop form the nucleotide binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                         ## ###                       
NP_608444  541 LKIKKLCKRFatn--------------drpALNLFSWNVYEneVTVLMGHNGCGKSTLLKILAGlvePSRGTVMISShni 606  fruit fly
NP_608444 1232 TVICKLFMIYefkli-----------cmdpVVNFTSVEVFKseCLSITGANNSGKTTLLKVVVNetkMNAGQLWIHDysv 1300 fruit fly
NP_732473  303 IEVRSLSKTFgf----------------rnVVKDLFFNVYEneITALVGHKGSGKTTIIMMLCGilqPTTGTVLINGydi 366  fruit fly
NP_788912  438 IEFRGVWQKYsns---------------tyVVQDITLNVYAgeVVALLGHNASGKSTIIKMLYGrtrPKLGEIYLSGfni 502  fruit fly
NP_611464  474 VRARNIEKVFne----------------wiAVKDLNLNFYQdeITVFLGHNDSGKSTILMLLAGflrPSAGEITINGydl 537  fruit fly
XP_323340  461 VQLDGFTKIYkpgpfrnmfsflskprepviAVNGLTLTARRgqILVLLGANGSGKSTTLDIIAGinkLSSGSITVDGtg- 539  Neurospora crass...
EAA46720   435 IQTSELRKVYspsiwtkmfccgarrgavvtALDGIDLTAQKqqIMCLLGVNGSGKTTTLELIGGmqkSTAGSVQINSnyt 514  Magnaporthe gris...
EAK84592   529 LMIRNLTKKYgkke-------------sslAVDNLDLEVPRgsITCLLGSNGSGKSTTIGIVGGtvrKTSGEIYIDGfer 595  Ustilago maydis 521
CAG79630   397 VLLEDVTKTYkirsrwtg-----rvkntvtAVDHLNLPVHNgqIVCLLGANGSGKTTTLEMISNiqkPSSGTITFSPgs- 470  Yarrowia lipolyt...
EAL32794  1221 LIIRSLGKRHkk----------------ryIIEGLNLRIGKteCVSLNGYNTSGKTTLLKLLVHetrATCGRIWVGGysm 1284 Drosophila pseud...
Feature 1                     #                                                                
NP_608444  607 qterkaasmeLGIAFGHDMLltgFTVIDYLRFICRVKGlhnnieidgqsnyflnvlqigglktkrirtLTDRDLCLVSIC 686  fruit fly
NP_608444 1301 nthrvqcyrmVGYCPQKDSLpseFTPRELLYIHAMLQGhrhrigrelseallr-lvgltpcwnrsvrmCTTGQIRRLYFA 1379 fruit fly
NP_732473  367 vteakvakssLGICPQHSVIfkgMSARDHIYFFSRVKGynkteammesniyis-klglvdsqkwdamrLSPGNQRRLSLA 445  fruit fly
NP_788912  503 vtqrkealknSSISMSYKTLfteLVVLDHLVFLSRLRGlskteakleakallr-ylkledwektlvndLTIGQRRVLQFL 581  fruit fly
NP_611464  538 atnqrkarqsMCICPQPNVLfekVNARWHLQFYCRLKGlnrqeasaetdkyle-igrlqdfantkvknLPSGIKRMLMLC 616  fruit fly
XP_323340  540 ---------gLGIAPQKNVLwdeLTVEEHLRIFNRLKSpnqlatkedilelis-gvdlaqkvdarsgtLSGGQKRKLQLG 609  Neurospora crass...
EAA46720   515 k------lvrLGVCPQKNTLfpfLTVLEHVKIWSKIKHgsesietltklvey---cdlkpkinshardLSGGQKRKLQLA 585  Magnaporthe gris...
EAK84592   596 ga---appglVGVCPQKDVLfnqLNCLQHVELFHAIKHrrgakddasdlltq---celshkleskptqLSGGQKRRLQTA 669  Ustilago maydis 521
CAG79630   471 ---------rVGICPQKNVIwdtLTCEEHLRIWTQLKGvpkkeipaaieflid-kcdlsrkrhdragtMSGGQKRKLQLA 540  Yarrowia lipolyt...
EAL32794  1285 arqrvqcyrrLGYCPQNDTLpgeFTPMELMYIQALLQGhyrhtakevseglir-mmglqsccnlpiqfCTTGQWRRLHFA 1363 Drosophila pseud...
Feature 1                  ##                               #                               
NP_608444  687 CAFVGnSPIILIDDVHSDLDKRTQSLVWNLINEEksk-rtIILVSNSPALAENIADRMAIMSn-GELKCTGTKPFLK 761  fruit fly
NP_608444 1380 YAVLGsPDLICVDGVPAGLDPTGKRIILMMTSTMqamgssFLYTMLTGLDAERLSLRTPLLLe-GQLWMIRPMDTET 1455 fruit fly
NP_732473  446 CALCAgSKVILCDEPSSGLDPIGRHELMRFLQKEkhg-rtILMTTQQLEEGEILADRIAIMNd-GQILCYGTLGYLK 520  fruit fly
NP_788912  582 CAFAGgNQIVILDKPFDGIDEQRTSLFYSLILDQkkn-rsIFFTSNNQKVASGIADRIFVLSk-GKLQAFGTVKKLC 656  fruit fly
NP_611464  617 CNLCGnSKILLLDEPGTSMDPAMRSNMWDLLRRErkg-rcIIMATHNMNEAEVVADQIVVLCd-AQVIGYGTTGFLT 691  fruit fly
XP_323340  610 MMLTGgSAVCCIDEVSSGIDPLSRRKIWDILLAErgh-rtMILTTHFLDEADLLADHIAIMSk-GTLRAEGSSVELK 684  Neurospora crassa O...
EAA46720   586 CMFAGgSEVLLLDEVTSGLDPVSRRAIWNIILGErsk-rsMIFTTHFLDEAEILADHITLLSk-GKIMCQGSGAELK 660  Magnaporthe grisea ...
EAK84592   670 AALVGqSTFLMFDEATSGLDPLSRRAIWKILLKErgk-rsILLTSHFLDEADLLGDHIVILAapGKKLCQGTPIELK 745  Ustilago maydis 521
CAG79630   541 IAFAGgTNVCAIDEVSSGLDPLSRRKIWEIITSSrgs-htMLLTTHFLDEADILGDNIAIMSk-GTLQVYGTTVQLK 615  Yarrowia lipolytica...
EAL32794  1364 LAILGsPAFICVDGVPAGIDPAGKRTIFTITAFMqsrgssFLYTSLLPLDSERLCHRTPVLYd-GQLWAIGCYKELS 1439 Drosophila pseudoob...

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