SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 [Equus caballus (horse)] - Gene

Summary

Official Symbol: SNRNP200provided by VGNC
Official Full Name: small nuclear ribonucleoprotein U5 subunit 200provided by VGNC
Primary source: VGNC:VGNC:23389
See related: Ensembl:ENSECAG00000019675
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Equus caballus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Also known as: ASCC3L1
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 15

Exon count:: 45

Annotation release	Status	Assembly	Chr	Location
103	current	EquCab3.0 (GCF_002863925.1)	15	NC_009158.3 (12464949..12492939)
102	previous assembly	EquCab2.0 (GCF_000002305.2)	15	NC_009158.2 (12194789..12222543)

Chromosome 15 - NC_009158.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: U5 small nuclear ribonucleoprotein 200 kDa helicase

Names: activating signal cointegrator 1 complex subunit 3-like 1; small nuclear ribonucleoprotein 200kDa (U5); u5 small nuclear ribonucleoprotein 200 kda helicase-like protein

NP_001295298.1

EC 3.6.4.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001308369.2 → NP_001295298.1 U5 small nuclear ribonucleoprotein 200 kDa helicase

Status: PROVISIONAL

Source sequence(s)

PJAA01000016

UniProtKB/TrEMBL

A0A3Q2HMU8, F7E0H9

Related

ENSECAP00000017686.1, ENSECAT00000021475.2

Conserved Domains (5) summary

smart00611
Location:1809 → 2125

SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins

COG1204
Location:452 → 1241

BRR2; Replicative superfamily II helicase [Replication, recombination and repair]

PRK00254
Location:1310 → 1897

PRK00254; ski2-like helicase; Provisional

cd18021
Location:1325 → 1515

DEXHc_Brr2_2; C-terminal D[D/E]X[H/Q]-box helicase domain of spliceosomal Brr2 RNA helicase

pfam18149
Location:254 → 363

Helicase_PWI; N-terminal helicase PWI domain