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plxdc2b plexin domain containing 2b [ Danio rerio (zebrafish) ]

Gene ID: 100000303, updated on 27-Mar-2024

Summary

Official Symbol
plxdc2bprovided by ZNC
Official Full Name
plexin domain containing 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-140106-69
See related
Ensembl:ENSDARG00000059950 AllianceGenome:ZFIN:ZDB-GENE-140106-69
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
plxdc2; zplxdc2
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLXDC2 (plexin domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (41517175..41627958, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (41237102..41347885, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene MAM and LDL receptor class A domain containing 1 Neighboring gene ADP-ribosylation factor-like 8

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
plexin domain-containing protein 2
Names
plexin domain containing 2
zmp:0000001109

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146305.2NP_001139777.1  plexin domain-containing protein 2 precursor

    See identical proteins and their annotated locations for NP_001139777.1

    Status: VALIDATED

    Source sequence(s)
    BX005319
    UniProtKB/TrEMBL
    A0A8M1NTQ6, C0SQ73
    Related
    ENSDARP00000078364.3, ENSDART00000083929.6
    Conserved Domains (1) summary
    smart00423
    Location:322366
    PSI; domain found in Plexins, Semaphorins and Integrins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    41517175..41627958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)