Similar studies for GEO DataSets (Select 200140562) - GEO DataSets

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Items: 16

Select item 2001405621.

Transcriptome analysis of BPH-resistant and BPH-susceptible rice seedlings in response to BPH infestation

(Submitter supplied) Transcriptome analysis of BPH-resistant and BPH-susceptible rice seedlings in response to BPH infestation. RH vs. 02428: a microarray analysis of genes that were differentially expressed in a BPH-resistant cultivar, Rathu Heenati (RH) and a susceptible cultivar 02428 after infestation with BPH for 24h. RB vs. SB: a microarray analysis of genes that were differentially expressed in resistant seedling pool and susceptible seedling pool both infested with BPH for 24h. more...

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL8852
8 Samples

Download data: TXT

Series

Accession:: GSE140562

ID:: 200140562

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000741062.

Microarray analysis reveals the molecular foundation of the brown planthopper(BPH) resistance of rice variety Rathu Heenati

(Submitter supplied) In order to reveal the molecular foundation of BPH resistance of RH, the whole genome expressional profiles of RH together with the control TN1 under BPH infestation were determined using cDNA microarray analysis.

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
36 Samples

Download data: CEL

Series

Accession:: GSE74106

ID:: 200074106

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000936073.

Structure-function Analysis of Rice Immune Receptor BPH14 Reveals Planthopper-resistance Mediated through Protein-protein Interaction with WRKY46/72

(Submitter supplied) BPH14 is the first planthopper-resistance gene which encodes a coiled-coil–nucleotide-binding site–leucine-rich repeat (CC-NB-LRR) protein. Here, we analysed the function of BPH14 domains and characterized the possible molecular mechanisms underlying BPH14-mediated BPH resistance. In this study, we found BPH14 form homo-complexes and interacted with WRKY46 and WRKY72, to enhance WRKYs accumulation and increase WRKYs-dependent transactivation activity. more...

Organism:: Oryza sativa

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL19290
2 Samples

Download data: TXT

Series

Accession:: GSE93607

ID:: 200093607

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001231484.

A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Oryza sativa Japonica Group

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL23876
44 Samples

Download data

Series

Accession:: GSE123148

ID:: 200123148

PubMed Full text in PMC Similar studies

Select item 2001230795.

A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [miRNA-seq]

(Submitter supplied) Here, a combined small RNA and transcriptome sequencing analysis was performed on the BPH6-transgenic and Nipponbare plants sheath samples at the different feeding stage by BPH, and differentially expressed microRNAs (DEMs) and genes (DEGs) were identified and further analyzed for a possible involvement in BPH6 mediated resistance mechanism. A total of 217 DEMs and 7,874 DEGs were identified in the BPH6-transgenic and Nipponbare plants after BPH feeding. more...

Organism:: Oryza sativa Japonica Group

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL23876
26 Samples

Download data: XLS

Series

Accession:: GSE123079

ID:: 200123079

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001229936.

A combined small RNA and transcriptome sequencing analysis illuminates the response of resistance to brown planthopper in rice [RNA-seq]

Organism:: Oryza sativa Japonica Group

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23876
18 Samples

Download data: XLS

Series

Accession:: GSE122993

ID:: 200122993

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000461737.

Transcriptional profiles of non-transgenic and OsEREBP1 over-expressed transgenic plants

(Submitter supplied) Overexpression of a transcription factor OsEREBP1 results in attenuation of disease symptoms upon infection with bacterial pathogen Xanthomonas oryzae pv. oryzae and tolerance to drought stress in transgenic rice plants. Microarray analysis was performed to identify genes regulated by the rice transcription factor OsERBP1.

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
6 Samples

Download data: CEL

Series

Accession:: GSE46173

ID:: 200046173

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000779128.

Transcriptional effects after the expression of MYB30, MYB55 or MYB110 gene

(Submitter supplied) Transcriptional profiling of rice transgenic calli which were stably transformed with the vector containing the dexamethasone (DEX)-inducible promoter and each of three MYB gene (MYB30, MYB55 or MYB110) or control. Calli were treated with DEX for 4 h to induce transgene expression. Ethanol was the solvent of DEX and used as control.

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL6864
4 Samples

Download data: TXT

Series

Accession:: GSE77912

ID:: 200077912

Select item 2000075679.

BTH-responsive rice genes

(Submitter supplied) Benzothiadiazole (BTH) is a so-called ‘plant activator’ and protects plants from diseases by activating the salicylic-acid (SA) signaling pathway. We identified BTH-responsive genes in rice leaves 24 h after treatment using rice 44K microarray. Keywords: response to chemical treatment

Organism:: Oryza sativa

Type:: Expression profiling by array

Dataset:: GDS3070
Platform:: GPL5101
8 Samples

Download data: TXT

Series

Accession:: GSE7567

ID:: 200007567

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 307010.

Benzothiadiazole effect on Oryza sativa leaves

Analysis of leaves of Oryza sativa plants treated with benzothiadiazole (BTH). BTH is a functional analog of salicylic acid and enhances the resistance of rice to the fungal pathogen Rhizoctonia solani. Results provide insight into the molecular mechanisms underlying BTH-induced disease resistance.

Organism:: Oryza sativa

Type:: Expression profiling by array, transformed count, 2 agent sets

Platform:: GPL5101
Series:: GSE7567
8 Samples

Download data: TXT

DataSet

Accession:: GDS3070

ID:: 3070

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 20009254911.

Identification and analysis of brown planthopper-responsive microRNAs in the resistant and susceptible rice plants

(Submitter supplied) MicroRNAs (miRNAs) regulate a spectrum of development and defense response processes in plants. The brown planthopper (BPH) is the most devastating insect pest of rice, BPH resistance gene BPH15 has a strong resistance to BPH. In this study, we analyzed six miRNA profiles of BPH15 introgression line (P15) and susceptible recipient line (PC) in 3 time points (0h, 6h and 48h) after BPH attacked, and identified 464 known miRNAs and 183 novel miRNAs. more...

Organism:: Oryza sativa

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL13160
6 Samples

Download data: XLS

Series

Accession:: GSE92549

ID:: 200092549

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20005239412.

Illumina Solexa Digital Gene Expression Sequencing Facilitates Quantitative Analysis of Wild Type (Kasa-1) and OsMYB103L overexpression transgenic rice plant (Y103-1). Transcriptomes

(Submitter supplied) Overexpression of OsMYB103L leads to leaf rolling in transgenic rice plants. To explore the possible molecular mechanism of OsMYB103L’s effects on rice leaf development, we examined the expression profiles of OsMYB103L overexpression transgenic rice plants and wild type leaf blades using Digital Gene Expression (DGE) profiling analysis.

Organism:: Oryza sativa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13160
2 Samples

Download data: TXT

Series

Accession:: GSE52394

ID:: 200052394

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20001037313.

Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

(Submitter supplied) Using rice cultivars Nipponbare, which exhibits resistance to Striga hermonthica (a root parasitic plant that causes devastating loss of yield), and IAC165, which is susceptible, we aim to identify suites of genes underlying susceptibility and resistance to S. hermonthica by profiling changes in gene expression using rice whole genome microarrays. In addition to a functional categorisation of changes in gene expression, genes that were significantly differentially regulated within regions predicted to contain Nipponbare quantitative trait loci for resistance were identified. more...

Organism:: Oryza sativa; Oryza sativa Japonica Group

Type:: Expression profiling by array

Platform:: GPL2025
24 Samples

Download data: CEL

Series

Accession:: GSE10373

ID:: 200010373

Select item 20002253814.

Differential expression for rice-gall midge interaction

(Submitter supplied) We exposed Kavya rice seedlings to different gall midge biotypes, GMB1 and GMB4M, which exhibit incompatible and compatible interactions, respectively.

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
9 Samples

Download data: CEL, CHP

Series

Accession:: GSE22538

ID:: 200022538

Select item 20002996715.

Expression data from rice after brown planthopper attack

(Submitter supplied) The aim of this study was to analyze potential brown planthopper (BPH) resistant genes in Rathu Heenati (RHT) by Affymetrix whole rice genome array,BPH susceptible and resistant rice varieties of TN1（Taichung Native 1）as control. All the resistant related genes derived from RHT will be analyzed according to the SSR markers interval flanked on the chromosome 3, 4, 6 and 10. It will be benefit to the gene clone and marker assistant breeding for Bph3 gene in the near future. more...

Organism:: Oryza sativa

Type:: Expression profiling by array

Platform:: GPL2025
18 Samples

Download data: CEL

Series

Accession:: GSE29967

ID:: 200029967

Select item 20007474516.

Expression data from brown planthhoper (BPH) infested and non-infested rice

(Submitter supplied) KMD is genetically engenered to be highly resistant to lepidopteran pests through expressing a synthetic cry1Ab gene and its parent non-transgenic rice is Xiushui 11.The developmental duration of BPH feeding on KMD2 was significantly delayed. And moreover, the fecundity of BPH was significantly lower when fed on Bt rice than on the non-Bt parental plants.To investigate unintended effects in KMD2 that causes changes in BPH performance, we performed microarray (GeneChip) analysis to compare the gene expression profiles between Bt rice and non-transgenic parental plants in response to BPH infestation. more...