1CF7,4YO2,1CF7


Conserved Protein Domain Family
E2F_TDP

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pfam02319: E2F_TDP (this model, PSSM-Id:396755 is obsolete and has been replaced by 460530)
E2F/DP family winged-helix DNA-binding domain
This family contains the transcription factor E2F and its dimerization partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
Statistics
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PSSM-Id: 396755
Aligned: 170 rows
Threshold Bit Score: 28.5758
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CF7_A         9 EKSLGLLTTKFVSLLqeakDGVLDLKLAADTLA----------------------VrQKRRIYDITNVLEGIGLIEKKSK 66 
A0BSR6       136 QKGLRNLSVKVRDIVle-lKS-TSYKDVAQRLIqdlgsdgqiv---eldnpkdeqN-IKRRVYDALNVMIASKVLRKEGK 209 Paramecium tetr...
EIJ87361       9 RTGLKAFSAMILSIMq--kEKSIEYTKVADIIMsmteg------------tgddkN-VKRRVYDALNVMCAVNLIKKE-- 71  Nematocida pari...
Q8SRS9        15 REGLKYITQAVFQVLr--eNGACTYSFICKNIVfpn-----------------teT-LNRRIYDVLNVMKAVRLVDKKGK 74  Encephalitozoon...
EOB15196      14 KEGLKYIASAVYKLIk--eENGCTYSYICDNIPlpn-----------------rrT-LHRRIYDVLNVMKAVNLIDSKNK 73  Nosema bombycis...
XP_002996121  14 KDGMKYITSSVYNIIk--nNDGVTYAYICENIQmts-----------------kkT-LYRRIYDVLNVMKAVQIIDKKNK 73  Nosema ceranae ...
EGC35356     243 SKGLRYLSYKVCQKVq--sKKTTTYIEVSNELLsefieenrrlgtyegdasfktnT-IKRRIYDVLNVFQAMNIIQKD-K 318 Dictyostelium p...
XP_004360286 205 SKGLSYLSQKVCQKVq--sKQTTSYVEVSNEIIaeyikenvan--gskesdlktnT-MKRRIYDVLNVFQAMNIISKD-K 278 Cavenderia fasc...
Q5H9I0       108 GMGLCRLSMKVWETVq--rKGTTSCQEVVGELVakfraasnha--spnesaydvkN-IKRRTYDALNVLMAMNIISRE-K 181 human
EFJ49667      22 AGGLRLFSLKVVEKIr--sRVRTTYNAVANELVsdqnmsg--------gnardgkS-IRRRCYDAINVLLACGLIMKDDK 90  Volvox carteri ...
1CF7_A        67 ---NSIQWKG 73 
A0BSR6       210 rviSDVYCkh 219 Paramecium tetraurelia
EIJ87361      72 ---KKMAYlt 78  Nematocida parisii ERTm3
Q8SRS9        75 ------RYFL 78  Encephalitozoon cuniculi
EOB15196      74 ------KYFL 77  Nosema bombycis CQ1
XP_002996121  74 ------KYFM 77  Nosema ceranae BRL01
EGC35356     319 ---QKISWLG 325 Dictyostelium purpureum
XP_004360286 279 ---QKISWIG 285 Cavenderia fasciculata
Q5H9I0       182 ---KKIKWIG 188 human
EFJ49667      91 ---KQIVWRG 97  Volvox carteri f. nagariensis
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