3KJO,4HID


Conserved Protein Domain Family
POT1PC

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pfam16686: POT1PC (this model, PSSM-Id:374726 is obsolete and has been replaced by 435514)
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ssDNA-binding domain of telomere protection protein
POT1PC is the ssDNA-binding domain on a family of fungal telomere protection protein 1 proteins. POT1PC is able to accommodate heterogeneous ssDNA ligands. Pot1 proteins are the proteins responsible for binding to and protecting the 3' single-stranded DNA (ssDNA) overhang at most eukaryotic telomeres.
Statistics
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PSSM-Id: 374726
Aligned: 92 rows
Threshold Bit Score: 66.8858
Created: 25-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3KJO_A       153 LCDVQ-PMQYFDLTCQLL-GKA-E-V-DGASFLLKVWDGTRTPF------------------PSWRVLIQDLVLEGDL-- 207 human
EDQ92604     411 LAQLDaLGT-FTLIVKVV-DIScP-N-PPHPACLLCWDGSQHPS------------------YKLNPNHPAYAK------ 462 Monosiga brevic...
EGT59944      23 TYYLQ-WRRYMDLIAQVH-SVV-L-T-QRGTYVLKCWRGTKFGP------------------ANKAMEVESRLFRVNQdc 79  Caenorhabditis ...
EGT54172      23 NYYLE-WMRYMDLIAQVH-SIV-L-T-QKNMYVLRCWRGDKFGP------------------RNRALEVESNLFRVTQny 79  Caenorhabditis ...
EGT56753      23 TYYLQ-WCRYMDLIAQVH-SIV-L-T-QRDVYVLRCWRGTKFGP------------------SNRASGVESRLFRVRQey 79  Caenorhabditis ...
1_pfamImport   2 TFYIN-YLRYFDVLGQLH-SVA-E-T-KYGTWMLRLWRATQFGP------------------EKYERCREEGMFRVRQdy 58 
EJW82044     189 LNELV-LGGYSDLVVQAI-SLF-I-D-DRNSVVLRCWDTTLPSKk-----------------IFMFNDDMITEVICQD-- 244 Wuchereria banc...
EJD74141     199 LNEFF-LGGYNDITVQAI-ALF-I-D-DRNNVILRCWDTTSPPRk----------------iFVLNPEFINKVIYRDG-- 255 eye worm
XP_018655524 171 LDLLN-GEEYCTIEGQII-SIYnSvE-IDNRIVLYIWDGPQSNNkqstvfiglpqdhllqllPYSQHDPHLAALTGHNlq 247 Schistosoma man...
PDM74781      26 LADIP-RGCYADVIVQFVcSIP-S-DkNPGLLCLLVWDGSDWPH------------------KVTPLITVEGEERPEKhp 84  Pristionchus pa...
3KJO_A       208 ----------------------------SHIHRLQN-LTIDILVYDNHVHVARS--LKVGSFLRIYSLHT----KLQSMN 252 human
EDQ92604     463 ----------------------------VQAANLEN-LCVNILAWEQHAKLVMQq-LRPGDVVRLVGVTQ---------- 502 Monosiga brevic...
EGT59944      80 fkeyiv---------------spdpriaNAVEKLGReCLLEIVVYDEHISVLDS--VKSGDFVALQNVHG-----YVNGS 137 Caenorhabditis ...
EGT54172      80 fkqyia---------------ppdarigRAVENLGKeCLMEIVVYDEHIASLTG--IKSGDFVALKNVHGnvnvRLPH-- 140 Caenorhabditis ...
EGT56753      80 fkqyia---------------ppdprigRAIEKMGTeCLMEIVVYDEHVSSLNG--IKSGDFVALKNVHG-----YVNFT 137 Caenorhabditis ...
1_pfamImport  59 fhryii---------------ppdphiaKAINVYGYnHLMEIEIYDEHRDYLEA--LRSGEYITVTNVHY----SKGKVG 117
EJW82044     245 ----------------------------EKMEMIPMdYWCDIVLYEEHANFARNs-VKCGDVLLLINTHL-----YHSKS 290 Wuchereria banc...
EJD74141     256 ----------------------------KMEMTAVN-YWCDIVLYEEHGDFARNn-VKCGDILLLINIHL-----YHSLN 300 eye worm
XP_018655524 248 qwnenivknyetyaeedldkvlesnfssNSMETFRD-WSVPISIYDEYAISEPIvnIKPGDLIRIHNVHV----SCSRKN 322 Schistosoma man...
PDM74781      85 s-------------------------dpELNEKANG-RMVTIFSYNFDNQCKRP--IESGDWLYFENVHC----AYQRDS 132 Pristionchus pa...
3KJO_A       253 SenqtmlSLEFHLH-GGTSY--GR---GIRVLP--------ESNSDVDQLKKDLESANLT 298 human
EDQ92604     503 -------SANGQLNlSGRT--------EVQIQPldp---ddHEALALERLTQLLPGIPRS 544 Monosiga brevicollis MX1
EGT59944     138 L------VHTLTIH-GGDGMgrNR---GITIIPk------dYNQPEFLYFKARIDAVLHS 181 Caenorhabditis brenneri
EGT54172     141 -------SHTLSMH-RGDGDgrNR---GISVIPnd-----fRGERNLNLLREKIKWRLGN 184 Caenorhabditis brenneri
EGT56753     138 L------AHTLTLH-RGDGDgrNR---GISIIPk------dFNQHEFIIFKEKINDILAE 181 Caenorhabditis brenneri
1_pfamImport 118 D--------SLKLH-GGSLY--NR---GIFKVPd------dCSDHRFLEVKRRIENALDQ 157
EJW82044     291 -------GVALVMHnGGQSY--NR---SIVILD--------ANSKLKRDLLRNIDEFNIQ 330 Wuchereria bancrofti
EJD74141     301 -------GAAFAMH-GGRRY--NR---SIIILD--------DNNKLKLDLLRNIDEFNAK 339 eye worm
XP_018655524 323 Dhs---cGLQLRLHgNGHKFgrGIkylGNKCLLmnylndtlFTSGDDANILDEANRYGLL 379 Schistosoma mansoni
PDM74781     133 I------SSSLVMH--DNIR--PRfiwRLDLPVa-------NGLFYAKTLQKSMQRVKDa 175 Pristionchus pacificus
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