Conserved Protein Domain Family
RING-HC_TRIM60_like_C-IV

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cd16607: RING-HC_TRIM60_like_C-IV (this model, PSSM-Id:319521 is obsolete and has been replaced by 438269)
RING finger, HC subclass, found in tripartite motif-containing proteins TRIM60, TRIM61 and similar proteins
TRIM60 and TRIM61 are two closely related tripartite motif-containing proteins. TRIM60, also known as RING finger protein 129 (RNF129) or RING finger protein 33 (RNF33), is a cytoplasmic protein expressed in the testis. It may play an important role in the spermatogenesis process, the development of the preimplantation embryo, and in testicular functions. RNF33 interacts with the cytoplasmic kinesin motor proteins KIF3A and KIF3B suggesting possible contribution to cargo movement along the microtubule in the expressed sites. It is also involved in spermatogenesis in Sertoli cells under the regulation of nuclear factor-kappaB (NF-kappaB). TRIM60 belongs the C-IV subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a C3HC4-type RING-HC finger, a B-box, and two coiled coil domains, as well as a B30.2/SPRY (SplA and ryanodine receptor) domain positioned C-terminal to the RBCC domain. In contrast to TRIM60, TRIM61 belongs to the C-V subclass of TRIM family that contains RBCC domains only. Its biological function remains unclear.
Statistics
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PSSM-Id: 319521
Aligned: 6 rows
Threshold Bit Score: 98.5111
Created: 21-Apr-2016
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteRING-HC finger
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:Based on the structural evidence that Mus musculus RNF146 (4QPL) binds two Zn2+ ions through its RING-HC finger.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #  #           # #  #  #             #  #   
Q5EBN2        13 EASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDsFPCPFCHFC 59  human
Q495X7        13 ESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDtFPCPVCRFC 59  human
XP_012363438  13 EASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDsFPCPFCHFC 59  northern white-cheeked gibbon
XP_011823155  13 EASCPICLDYLKDPVTISCGHNFCLSCIIMSWKDLDDsFPCPFCHFC 59  drill
XP_009206065  13 ESSCPICLEYLQDPVTINCGHNFCRSCLNVSWKDLDDtFPCPVCRFC 59  olive baboon
XP_007998383  13 ESSCPICLEYLKDPVTINCGHNFCRSCLNVSWKDLDDtFPCPVCRFC 59  green monkey

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