Conserved Protein Domain Family
Pol_alpha_B_N

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pfam08418: Pol_alpha_B_N (this model, PSSM-Id:285602 is obsolete and has been replaced by 462470)
DNA polymerase alpha subunit B N-terminal
This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation. Also see pfam04058.
Statistics
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PSSM-Id: 285602
Aligned: 85 rows
Threshold Bit Score: 153.59
Created: 13-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q0CWG0        22 PKDVLAELQSILRVHSITPQELFYKWESFCLkMGAEEMK-LTLDTVRQLKQDVQDTLEResR-------G---------- 83  Aspergillus ter...
Q6BK10        22 NDDVIEKLSTLMQIFNLSSEDLFVHWESFNV-TKVQNDLdLTLPNLDLFQEHLQSTLVN--A-------Sskatpsirkv 91  Debaryomyces ha...
Q59PU7        22 SDDEYIKLQSLLDLFNKSMDDIFVEWESFNI-TEVKEDLdLNLSNLIRFQGYLQTKLAKnstpv------------skkt 88  Candida albicans
XP_003682173  17 DPETFSALQNLMDLHALTIEDLHIKWEQFSY-QKREKSTdLSSENLEQFKQYLQQQVEKkaA-------Q---------- 78  Torulaspora del...
XP_002554114  17 EPAVASALESLMKIHSLDVEELYIKWEQFAY-HQNEQSTaLNVDMINAFKQFLQQQIEKkaSmaggpgsA---------- 85  Lachancea therm...
XP_001385361  25 tEDVCKELGTLMSLYQLSSDDLYIKWESFNVa-EVQENLdLTIENIDRFQKYLQSSLSt-sR-------A---------- 85  Scheffersomyces...
XP_002498560  17 KPEIVSALEHLTKLHALTIDDLYVKWEQFSn-QKNFKNAnLDPVNLDNFKQYLQLQIEK--R-------A---------- 76  Zygosaccharomyc...
XP_003958657  22 NPDILSHLENLSKLFAITSEDLYIKWEQFSYqT-LNNETsLSMRNLTQFKSFLQAQIEKqaN-------A---------- 83  Kazachstania af...
XP_006689622  23 DNGVISKIHTLKNIFNLSTEDIFLQWETYNVs-EVKENLeLSLIVLDGFQEYLQRHLADasN-------K---------- 84  Candida tenuis ...
XP_002549858  22 sDEEYEKIQWLSDTYEKSIEDLFLEWESFNV-TEVQQDLdLNLDSLNQLQSYLQTKLSKn-------------------q 81  Candida tropica...
Q0CWG0        84 KVG-------------RQTEkrs---apTATPratg----ttdVFGML-DGLT---P------N-------GRTpksvng 126 Aspergillus ter...
Q6BK10        92 KDLqss-------tmrRKPIirssadinSSSP--------------------AnaiP------StpslkkrKVVe----- 133 Debaryomyces ha...
Q59PU7        89 RDTigs-------tsnRKQFrt-------------------vdNHHLtpql-----------------kkrKFEd----- 120 Candida albicans
XP_003682173  79 ASAaisnps--svskkPKPLkp-----lQSSPs----------LFGF----NI---P------RgsslkkrKLNagsn-- 126 Torulaspora del...
XP_002554114  86 ASS-------------LKKPkml--rpnVSSPs----------LFGFG----A---P------KtptlkkrRVD------ 121 Lachancea therm...
XP_001385361  86 TPT-------------AKRArd----iqGSNIkkkpii-rsnadFNSS-SPVI---P------StpnlkkrKVIe----- 132 Scheffersomyces...
XP_002498560  77 AKA-------------PTTFnht---nvARKPkpvrsvngsptLFGL----NV---S------KtptlkrrKMNde---- 123 Zygosaccharomyc...
XP_003958657  84 AVGnlsnsttsntsnsVPTAkk----pkN--Irplt---anssLFGF----NI---P------Ktpilt----------- 130 Kazachstania af...
XP_006689622  85 TPS-------------VKRLrd----svGSTIkrrp--------lkpL-NSSS---PiaesnfHtpslkmrKVNgtp--- 132 Candida tenuis ...
XP_002549858  82 TPS-------------FKKIkd----giTLGGsnkk---lkrnNNELSsGGHI---P------StpylkrkKLDdelgs- 131 Candida tropica...
Q0CWG0       127 sakrksdfASPSISKAGKIgs-eQSPIGS-KTPRIA-NGAGAGDGLQPV--R---FADRPN--------------P---- 180 Aspergillus ter...
Q6BK10       134 --------ETPAFKTPQLKm--eSSPI-N-YATANNtFQSPIP----EV--N---NNLQSS--------------Ptplf 178 Debaryomyces ha...
Q59PU7       121 --------NTPEFKTPAgi--pvSSPTTD-YETANNtFVGLTTNGT-PT--T---TTAKTT--------------Ps--- 166 Candida albicans
XP_003682173 127 ----yqdtE-------AGSkl-eFSQGPS-EDNINKe--NELSHGNADT--S---MSTPPNlrsmgspavnstfkS---- 182 Torulaspora del...
XP_002554114 122 --------QTPTQSNIEGDtislASPTEK-KEASTMpPSVRLAAGESPV--TpslLANNPD--------------P---- 172 Lachancea therm...
XP_001385361 133 -------eATPAFKTPRADfn-aSSPADF-NT-ANNtFQSPST-----P--N---VSKKQE--------------S---- 174 Scheffersomyces...
XP_002498560 124 -------lESDGKSKSSPLhf-sTTPLSA-NSTPGPd--LNSMAAIPSQ--D-----DIQ---------------S---- 166 Zygosaccharomyc...
XP_003958657 131 ---kkrkiESIDGNDSKNIklefSQDENN-SMNSEVsIKNEISTGTPIPkrS---VTLKQE--------------S---- 185 Kazachstania af...
XP_006689622 133 -------fkTP------GAgp-dSSP-SN-FETANNtFRN--------S--P---VRSSEL--------------S---- 165 Candida tenuis ...
XP_002549858 132 ----nglnTTPDFKTPMAYgv-tSSPGATdFETANNtFAGNNNAS----------------------------------- 171 Candida tropica...
Q0CWG0       181 ---------GQTIETIN-A-H-LPLPETpmap--fseT-------RIRWTANTDLKKFGYKPLAMRLSETSEILDDRIDE 239 Aspergillus ter...
Q6BK10       179 nkllkneesNTVIETLNpDieelpgymqldedpstaiK-------PYRLASNFDASKFKYRTMSMKLLESADVLDDQIDS 251 Debaryomyces ha...
Q59PU7       167 ---------NSLLETLNpQideiti------dqlpegK-------TFRLSTNFDASKFKFRTMQMKLLESADVLDDQIDR 224 Candida albicans
XP_003682173 183 ---------GEIKTSLNpE-E-MEVACGlqe---dseK-------RVNITPFYDPEKYKFRTMRQNLSDAADVLDMQIEI 241 Torulaspora del...
XP_002554114 173 ---------GKVVDVFNlA-D-IEVSEGlnl---dgeK-------LVKPIPFYDSEKYKFRTMRQNLLDVADVLDEQIEI 231 Lachancea therm...
XP_001385361 175 ---------NTIIETLN-P-E-IDVLPGfvql--dedPats--lkPYKLMYNFDASKFKYRTMSMKLLESADVLDDQIDS 238 Scheffersomyces...
XP_002498560 167 ---------GKILDSLN-S-NnLEIATGidv---tdgT-------KLKISPYYDPEKYHFRTMRQSLIDVADVLDEQIEI 225 Zygosaccharomyc...
XP_003958657 186 ---------GKIIDSLN-PqN-LEISAGyhse--gksSnddqtvsKVRIQPIYDPIKYKFRTMRQNLIEVSDVLDEQIEI 252 Kazachstania af...
XP_006689622 166 ---------NTILETLN-G-H-IDSVENgqtn----------ekgKIQIASNFDPQKYKFRSMAMKLLESADFLDDQIDN 223 Candida tenuis ...
XP_002549858 172 ---------NSLLETLN-P-E-IDEIEndel---pedR-------PFKLATNFDSTKFKFRTMQMKLLESADVLDDQIDR 229 Candida tropica...
Q0CWG0       240 FTALFEKEYEGEDITFGSAATQS 262 Aspergillus terreus NIH2624
Q6BK10       252 MTQLFQENQESTDLQFGNPCLCS 274 Debaryomyces hansenii
Q59PU7       225 MISLYQDQNKTADLQFGNPCMST 247 Candida albicans
XP_003682173 242 IAEIVQNHYKLSASEFGDPTIQA 264 Torulaspora delbrueckii
XP_002554114 232 FTKVFQDHYKTTAS---DPTIQS 251 Lachancea thermotolerans CBS 6340
XP_001385361 239 FTQLYIDNHKEDGNLFGNPCISS 261 Scheffersomyces stipitis CBS 6054
XP_002498560 226 LSNIVQNHYQLQASDFGDPTIQA 248 Zygosaccharomyces rouxii CBS 732
XP_003958657 253 FTKLIMESFKLPPSDFADPTVQS 275 Kazachstania africana CBS 2517
XP_006689622 224 FAQLFQDAHKGEDLNFGNPCLSS 246 Candida tenuis ATCC 10573
XP_002549858 230 MINLYQEQNKTADLQFGNPCLST 252 Candida tropicalis MYA-3404
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