Conserved Protein Domain Family
Pol_alpha_B_N

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pfam08418: Pol_alpha_B_N 
DNA polymerase alpha subunit B N-terminal
This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation. This domain adopts an OB fold.
Statistics
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PSSM-Id: 462470
Aligned: 77 rows
Threshold Bit Score: 113.966
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5K7S4        24 PDVMAECLSLMRLYNLTASDLFFKYEAFVMsRPSGLRaKLSTITINSVKE-LRTELQRSQQAkavanmgaaNVPrlNGSE 102 Cryptococcus ne...
Q6FUD5        18 ASIASILESLMKLHSLDVEELYIRWEQFSY-QRHEKQtDLNLKNLDSFKEfLQQQIEKk----------------aLQVS 80  [Candida] glabrata
XP_003682173  18 PETFSALQNLMDLHALTIEDLHIKWEQFSY-QKREKStDLSSENLEQFKQyLQQQVEKKa---------------aQASA 81 
P38121        18 PEIITALENLTKLHALSVEDLYIKWEQFSN-QRRQTHtDLTSKNIDEFKQfLQLQMEKr----------------aNQIS 80  Saccharomyces c...
XP_002498560  18 PEIVSALEHLTKLHALTIDDLYVKWEQFSN-QKNFKNaNLDPVNLDNFKQyLQLQIEKr----------------aAKAP 80 
EDO14616      18 SSILETMESLLRIHALSVEDLFIKWEQFSV-HRNETHtKLNQKNLESYKDfLQQQVEKr----------------aQQIA 80 
XP_003688149  18 SDVIAYLENLIKIYALNIEELFIKWEQFSY-HRHETHtAMNTKNLDGFKNfLQKQIEKk----------------aQKFS 80 
CCC67651      20 PEILAILLNLTKIHAINVEDLYIKWEQFSN-SKHETQtEFTIKNLDQFKQfLQHQMEKQANa-------------mSMNS 85 
CCD22692      15 PEILTILENLSKIHAISAEDLYIKWEQFSI-GKNETHtEYSLRNLDQFKQfLQQQVEKHAKSis----------spIIKN 83 
CCF59522      23 PDILSHLENLSKLFAITSEDLYIKWEQFSY-QTLNNEtSLSMRNLTQFKSfLQAQIEKQANAa-------vGNLsnSTTS 94 
Q5K7S4       103 KkaavgvkKAKGLG--------DLEGLLGNLttpNRPTKpRpsasst--------------ispshfASPASTVKATpSh 160 Cryptococcus ne...
Q6FUD5        81 SasrktgpMKKNKVvrgs-tnnSAFGF---Si-pNTPTI-Kkrklqv---------------ssstkKENGHENSLHfSe 139 [Candida] glabrata
XP_003682173  82 AisnpssvSKKPKPlkplqsspSLFGF---Ni-pRGSSL-Kkrkln----------------agsnyQDTEAGSKLEfSq 140
P38121        81 SsskvntsTKKPVIkksl-nssPLFGL---Si-pKTPTL-KkrklhgpfslsdskqtynvgseaetnEKGNSSLKLEfTp 154 Saccharomyces c...
XP_002498560  81 TtfnhtnvARKPKPvrsvngspTLFGL---Nv-sKTPTL-Krrkmn----------------delesDGKSKSSPLHfS- 138
EDO14616      81 SssnvhssGVKPKIvkpigsspSLFGF---Ni-pKTPTL-Kkrklnv--------------kdsnggSVSNTSSKLEfSa 141
XP_003688149  81 NtsnvtssGLKSKIigs---spSLFGF---Ns-pRTPII-Kkrklne---------------tqptsSGQKSSQKLGfSs 137
CCC67651      86 AssnpssnRKKLKAlrpsnlspSIFGMGLSSs-pRTPTL-Kkrklgi--------------tssvtsSTEKSNLKLEfKd 149
CCD22692      84 KsnnpsssLKKPRSlrpl-nasPMFGIPLNSs-pRTPLL-Kkrklasa-------------nqtnlnGNTPNGAKLEfNn 147
CCF59522      95 NtsnsvptAKKPKNirpltansSLFGF---Ni-pKTPILtKkrki------------------esidGNDSKNIKLEfSq 152
Q5K7S4       161 lttpQR---QSPLPPTASSYrpNPSklassn-----------------------nvfldTPmdkggngllvpssplspsg 214 Cryptococcus ne...
Q6FUD5       140 gtsvER---TQQLGSSPLLNsdANRdvg-----------------------------vsTP------------------- 168 [Candida] glabrata
XP_003682173 141 gpseDNinkENELSHGNADTsmS------------------------------------TPpnlr--------------- 169
P38121       155 gmaeDAvgdSAPLSHAKSSDakTPGsstfq------------------------tpttnTP------------------- 191 Saccharomyces c...
XP_002498560 139 ---------TTPLSANS------------------------------------------TPgpdl--------------- 152
EDO14616     142 gpanTId-iRDEGSQTTTPNimNSSilelgs-----------------------dviatTP------------------- 178
XP_003688149 138 gsnaNNkseNIEKSNTTSPSmtGSTqinlps-----------------------ditvsTP------------------- 175
CCC67651     150 eptaAIkseIHEEEVPSRDSldNSTesianv-----------------------svkteTP------------------- 187
CCD22692     148 gndsNS---DIKMEQEQGSErpPASdiidnetstvsvkseitfdsantsainnmsnvkiEP------------------- 205
CCF59522     153 dennSM---NSEVSIKNEISt-------------------------------------gTPi------------------ 174
Q5K7S4       215 vspssspqpSQsFTKQANSNTVVETLN---IHLPQlppshtrltsK------------------PRVELSSTITAADYNY 273 Cryptococcus ne...
Q6FUD5       169 ----------IkLRES---GKILDSLNpenIEIAG----------Gidpn----------vetaTKVSIAPYFDAKKYKF 215 [Candida] glabrata
XP_003682173 170 ------smgSPaVNSTFKSGEIKTSLNpeeMEVAC----------Glqe------------dseKRVNITPFYDPEKYKF 221
P38121       192 ----------TtSRQNVPAGEILDSLNpenIEISS----------Gnpnvgll----steepsyNQVKVEPFYDAKKYKF 247 Saccharomyces c...
XP_002498560 153 -----nsmaAIpSQDDIQSGKILDSLNsnnLEIAT----------Gidv------------tdgTKLKISPYYDPEKYHF 205
EDO14616     179 ----------ApLKSSHESGKILDSLNpenMEVAE----------Gldf------------eseDKVRISPYFDAQKFKF 226
XP_003688149 176 ----------SpLKRSGEAGVTLDSLNpnnIETSE----------Gfdp------------endKKVKITPFYDPIKYKF 223
CCC67651     188 ----------VhMKQSVEAGKILNSLNpenMEVSS----------Gldln----------aqdgKKIRISPFYDHKKYKF 237
CCD22692     206 --------------GEDTFGKILDSLNpenMDVST----------GlnlnilkglesnsdknreNKVKIAPFYDPQKYKF 261
CCF59522     175 --------pKRsVTLKQESGKIIDSLNpqnLEISA----------Gyhsegks----snddqtvSKVRIQPIYDPIKYKF 232
Q5K7S4       274 RYMFEKLSERSEALDDSIDEYADAIKDAYGLSE--LGDPHFVS 314 Cryptococcus neoformans
Q6FUD5       216 RTMRQKIQDAADVLDEQIEAFHELIKGHYKLSTtdFADPTVQS 258 [Candida] glabrata
XP_003682173 222 RTMRQNLSDAADVLDMQIEIIAEIVQNHYKLSAseFGDPTIQA 264
P38121       248 RTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPndFADPTIQS 290 Saccharomyces cerevisiae S288C
XP_002498560 206 RTMRQSLIDVADVLDEQIEILSNIVQNHYQLQAsdFGDPTIQA 248
EDO14616     227 RTMRQNLQDAADVLDYQIEMFKTIIQKHYELTNsdFGDPTIQS 269
XP_003688149 224 RTMRQNLQDAADVLDEQIEIFCKLAKEHFKLSQsdFGDPTIQS 266
CCC67651     238 RTMRQNLLDASDVLDEQIEIFSKIIQKHFNLSPsqFSDPTIQS 280
CCD22692     262 RTMRQNLIDASDVLDEQIEIFTKIIQEHYNLSPnqFSDPTIQS 304
CCF59522     233 RTMRQNLIEVSDVLDEQIEIFTKLIMESFKLPPsdFADPTVQS 275
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