2Q66,4LT6


Conserved Protein Domain Family
PAP_RNA-bind

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pfam04926: PAP_RNA-bind (this model, PSSM-Id:282743 is obsolete and has been replaced by 461484)
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Poly(A) polymerase predicted RNA binding domain
Based on its similarity structurally to the RNA recognition motif this domain is thought to be RNA binding.
Statistics
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PSSM-Id: 282743
Aligned: 113 rows
Threshold Bit Score: 98.8056
Created: 13-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2Q66_A       349 DFFFRYKFYLEITAYTRgSDEQHLKWSGLVESKVRLLVM--------KLEVLAGIKIAHPFTKPFESSY----CCPTEDD 416 baker's yeast
Q4DA83       371 KFFGEHKYYLHVLVSCT-DAEAYQGYVDAVESRIRFLWAgtaesrgyALENIRHVRI-RLNPRRYEAPEevetRARLLKK 448 Trypanosoma cruzi
Q9N6D7       374 SFFYRYRHFIVLLVNSQ-TADDHLEWCGLVESKVRLLIG--------NLERNPHIALAHVNPKCFEFKK----GQSANN- 439 fruit fly
Q17AA5       434 SFFFKYRHFIVLLVTSN-NADDHLEWCGLVESKIRYLIL--------NLERNQHINLAHVNPKCFEQHE------QNQTE 498 yellow fever mo...
EHY66800     342 DFFTRHKTYFMIAMACD-NSKEFGRFMGFAETRVRMFAQ--------KLESIENIEYAYTLPKNYH-------------- 398 Nematocida sp. ...
XP_011482394 374 SFFQKYKHYIVLTASAS-TEENHLEWVGLVESKIRVLVG--------NLERNEYITLAHVNPQSFPG------------- 431 Japanese medaka
EHJ73080     377 NFFSRYKHFIVLLASSA-NTLDQLPWCGLVESKIRHLIT--------TLERNQHITIAHVNPECYNSVP----LNTNNGH 443 monarch butterfly
EJW75422     134 NFFSRYKHFLALLCLSA-TEQDELVWCGLVESKIRFLIA--------SLERRESIRVCHVHTKYYQPRNdp--------- 195 Wuchereria banc...
XP_010697347 374 PFFGKFRHYLHIKVSCS-DAEHYQAYADGVESRIRILWAgnassrghTLEDYRQLRL-HLNPRRFEDPEevqlRTRLASK 451 Leishmania pana...
XP_001464305 374 PFFGKFQHYLQIKVSCS-DAEHYQAYADGVESRIRILWAgnassrghTLEDYRQLRL-HLNPRRFEDPEevqlRTRLTSK 451 Leishmania infa...
2Q66_A       417 YEM-IQDKYGSHKTETALnalklvtdENke---------------eESIKDAPKAYLSTMYIGLDFNIEn----kKEKVD 476 baker's yeast
Q4DA83       449 TSRsSGGGNGSMEVSSHQ--------TSg----------------aVDDSSSPKIFSCHYFIGMSVDPKa----tSGKIY 500 Trypanosoma cruzi
Q9N6D7       440 ------SQNNSGNEDDLK--------QSq----------------gNQSAVTSAPFCSMWFIGLEFERSe-----NLNVD 484 fruit fly
Q17AA5       499 RQR-------------------------------------------ESDGSRASTLCSLWFIGLEFERSe-----NLNVD 530 yellow fever mo...
EHY66800     399 LEG-VTQKEVPLLk--------------------------------DLQCGDEEYSFSVLFIGINFSSVklplnaSKKMN 445 Nematocida sp. ...
XP_011482394 432 ----------------------------------------------SKENRSENDFVCMWFIGIIFKKVen--aeSVNID 463 Japanese medaka
EHJ73080     444 PLA-LPPGTPVQTEEHGA--------AEv----------------kNDKGEIVANVCSMWFIGLVFDKT------NVNVD 492 monarch butterfly
EJW75422     196 ---------------------------------------------fPVQVSLQNPRCRLWFIGLDLNKTv-----SRKID 225 Wuchereria banc...
XP_010697347 452 ASG-AAAANHTRGSVGSR--------TTgqlsdsgstlrgsppmkdSTVSLGQTWLTANYFIGMTVDTKv----sSAKID 518 Leishmania pana...
XP_001464305 452 ATGaAAASSHTRGSVGSR--------TSgqlgdggsslvgsinakdSSAPSGPTWFTAHYFIGMAVDTKv----sSAKID 519 Leishmania infa...
2Q66_A       477 IHIPCTEFVNLCRSFNEdYgDHKVF---NLALRFVKGYDLPD--EVFDENEKRP 525 baker's yeast
Q4DA83       501 LAPSIRAFHGIVRQLRQ-Y-KEGITrlpVITVEDIS--KIPA--FVKSaagfke 548 Trypanosoma cruzi
Q9N6D7       485 LTESIQNFTEHVMMHGV-N-IKMLKegmTIDARHVKRKQLSL--YLDSDFLKRE 534 fruit fly
Q17AA5       531 LTESIQSFTDSVHKHAV-H-IKLLKdgmKIEARHVRRKQLSQ--YLDPNLLKRE 580 yellow fever mosquito
EHY66800     446 LKKPVQELKSSLEGYEQ-E-EECEL---RYEAIPLKQKALAPilNLFIEKESRK 494 Nematocida sp. 1 ERTm2
XP_011482394 464 LTYDIQSFTDTVYRQAN-N-INMLKdgmKIEATHVKKKQLHQ--YLPPELVQRK 513 Japanese medaka
EHJ73080     493 LTYDISSFTKAVHYQAE-N-TNVLRegmTIEARHVRRKQLHQ--YLSPSLLRRE 542 monarch butterfly
EJW75422     226 IQHEVQSFMDLLNSMAT-T-QNIYVegmSVIPHYLRKAELVK--WLKMEDLTRG 275 Wuchereria bancrofti
XP_010697347 519 LAPAIRTFHAVVRELRQ-Y-REGVTrlpVITVVDMT--RIPT--FVKEAagyve 566 Leishmania panamensis
XP_001464305 520 LAPAIRTFHTVVRELRQ-Y-REGVTrlpVITVVDMA--RIPT--FVKEAAGHVE 567 Leishmania infantum JPCM5
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