2HHP,4LT6


Conserved Protein Domain Family
PAP_RNA-bind

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pfam04926: PAP_RNA-bind 
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Poly(A) polymerase predicted RNA binding domain
Based on its similarity structurally to the RNA recognition motif this domain is thought to be RNA binding.
Statistics
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PSSM-Id: 461484
Aligned: 102 rows
Threshold Bit Score: 88.1171
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HHP_A       353 DFFFRYKFYLEITAYTRgSDEQHLKWSGLVESKVRLLVM--------KLEVLAGIKIAHPFTKPF--ESSYCCPTEDDYE 422
Q9N6D7       374 SFFYRYRHFIVLLVNSQ-TADDHLEWCGLVESKVRLLIG--------NLERNPHIALAHVNPKCF--EFKKGQSANNSQN 442 fruit fly
XP_004077012 366 SFFQKYKHYIVLTASAS-TEENHLEWVGLVESKIRVLVG--------NLERNEYITLAHVNPQSF--PGSKENRSEND-- 432
OWR49559     377 NFFSRYKHFIVLLASSA-NTLDQLPWCGLVESKIRHLIT--------TLERNQHITIAHVNPECY--NSVPLNTNNGHPL 445
EFA75017     376 DFFSRYQFYLQIDCSAQ-NEEEHRKWEGWIESKLRKLIS--------FLEQTPKMKFAIPFPKSF--ENKPTPAATTTAA 444
Q54J73       398 DFFTRYSFYIEIDCYSM-NEEDSRKWEGWIESKLRFLIS--------NLESTPKMKFAVPYPKGF--TNNLHKANN---- 462 Dictyostelium d...
Q4DA83       371 KFFGEHKYYLHVLVSCT-DAEAYQGYVDAVESRIRFLWAgtaesrgyALENIRHVRI-RLNPRRY--EAPEEVETRARLL 446 Trypanosoma cruzi
XP_001464305 374 PFFGKFQHYLQIKVSCS-DAEHYQAYADGVESRIRILWAgnassrghTLEDYRQLRL-HLNPRRF--EDPEEVQLRTRLT 449
XP_001563421 374 PFFGKFRHYLHIKVSCS-DAEHYQAYADGVESRIRILWAgnassrghTLEDYRQLRL-HLNPRRF--EDPEEVQLRTRLA 449
4LT6_A       371 nFFQKYRHYIVLTASAS-TEENHLEWVGLVESKIRVLVG--------NLERNEFITLAHVNPQSFpgNKEHHKDNN---- 437
2HHP_A       423 M-IQD---KYGSHKTETalnalklvTDENKEEESIKDA----------------PKAYLSTMYIGLDFNI-ENk---kEK 478
Q9N6D7       443 NsGNEddlKQSQGNQSAv-------T----------------------------SAPFCSMWFIGLEFER-SEn----LN 482 fruit fly
XP_004077012 433 ---------------------------------------------------------FVCMWFIGIIFKK-VEna-esVN 453
OWR49559     446 AlPPGtpvQTEEHGAAEv--------KNDKG-----EI----------------VANVCSMWFIGLVFDK-TN-----VN 490
EFA75017     445 N-----------------------------GEAVTDAN----------------NSNVCTSFFMGLGFNF-SNapgadKS 478
Q54J73       463 ------------------------------------------------------PDQICTSFFMGLSFNF-SNtpgadKS 487 Dictyostelium d...
Q4DA83       447 KkTSRssgGGNGSMEVSs--------HQTSGAVDDSSS----------------PKIFSCHYFIGMSVDP-KAt---sGK 498 Trypanosoma cruzi
XP_001464305 450 SkATGaaaASSHTRGSVg--------SRTSGQLGDGGSslvgsinakdssapsgPTWFTAHYFIGMAVDT-KVs---sAK 517
XP_001563421 450 SkASGaaaA-NHTRGSVg--------SRTTGQLSDSGStlrgsppmkdstvslgQTWLTANYFIGMTVDT-KVs---sAK 516
4LT6_A       438 ---------------------------------------------------------YVSMWFLGIIFRRvENae--sVN 458
2HHP_A       479 VDIHIPCTEFV-NLC-RSFN--Ed-YgDHKVF---NLALRFVKGYDLPDEVF--DENEKRP 529
Q9N6D7       483 VDLTESIQNFTeHVM-MHGV--NikM-LKEGM---TIDARHVKRKQLSLYLD--SDFLKRE 534 fruit fly
XP_004077012 454 IDLTYDIQSFTdTVY-RQAN--NinM-LKDGM---KIEATHVKKKQLHQYLP--PELVQRK 505
OWR49559     491 VDLTYDISSFTkAVH-YQAE--NtnV-LREGM---TIEARHVRRKQLHQYL---SPSLLRR 541
EFA75017     479 VDITKAVIDFT-HLI-KDWA--G----KGPTM---EMKVHYIKRRQLPAFVKaeAPPEEKP 528
Q54J73       488 VDLTKAVTEFT-GII-KDWL--RtqP-NPDTM---DIKVQYIKKKQLPAFVK--DEGPEEP 538 Dictyostelium discoideum
Q4DA83       499 IYLAPSIRAFH-GIV-RQLR--Q--Y-KEGITrlpVITVEDIS--KIPAFVK--SAAGFKE 548 Trypanosoma cruzi
XP_001464305 518 IDLAPAIRTFH-TVV-RELR--Q--Y-REGVTrlpVITVVDMA--RIPTFVK--EAAGHVE 567
XP_001563421 517 IDLAPAIRTFH-AVV-RELR--Q--Y-REGVTrlpVITVVDMT--RIPTFVK--EAAGYVE 566
4LT6_A       459 IDLTYDIQSFT-DTVyRQANniN--M-LKEGM---KIEATHVKKKQLHHYLP--AEILQKK 510
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