1CF7,1CF7


Conserved Protein Domain Family
E2F_TDP

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pfam02319: E2F_TDP (this model, PSSM-Id:280479 is obsolete and has been replaced by 460530)
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E2F/DP family winged-helix DNA-binding domain
This family contains the transcription factor E2F and its dimerization partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
Statistics
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PSSM-Id: 280479
Aligned: 200 rows
Threshold Bit Score: 28.5375
Created: 21-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1CF7_A         9 EKSLGLLTTKFVSLLQEAKdgvLDLKLAADTLA----------------------VrQKRRIYDITNVLEGIGLIEKk-- 64  human
Q8SRS9        15 REGLKYITQAVFQVLRENGa--CTYSFICKNIVfpn-----------------teT-LNRRIYDVLNVMKAVRLVDK--- 71  Encephalitozoon...
A0BSR6       136 QKGLRNLSVKVRDIVLELKs--TSYKDVAQRLIqdlgsdgqiv---eldnpkdeqN-IKRRVYDALNVMIASKVLRK--- 206 Paramecium tetr...
XP_001314177   4 DGSLKTISAVIADKLKAAGt--MNASDLTAMMIspiqg------------psqqtS-MKRRVYDVIGVLAAADIITK--- 65  Trichomonas vag...
XP_003288094 243 SKGLRYLSYKVCQKVQSKKt--TTYIEVSNELLsefieenrrlgtyegdasfktnT-IKRRIYDVLNVFQAMNIIQK--- 316 Dictyostelium p...
EOB11664      14 KEGLKYIASAVYKLIKEENg--CTYSYICDNIPlpn-----------------rrT-LHRRIYDVLNVMKAVNLIDS--- 70  Nosema bombycis...
XP_002996121  14 KDGMKYITSSVYNIIKNNDg--VTYAYICENIQmts-----------------kkT-LYRRIYDVLNVMKAVQIIDK--- 70  Nosema ceranae ...
EIJ87361       9 RTGLKAFSAMILSIMQKEKs--IEYTKVADIIMsmteg------------tgddkN-VKRRVYDALNVMCAVNLIKK--- 70  Nematocida pari...
XP_002949174  22 AGGLRLFSLKVVEKIRSRVr--TTYNAVANELVsdqnmsg--------gnardgkS-IRRRCYDAINVLLACGLIMKd-- 88  Volvox carteri ...
XP_001693751 371 agGLRFFSSQVVEQVRARSt--TTYADVADALCaassagp--------asardmkS-IRRRCYDALNVMLSAGLIERvag 439 Chlamydomonas r...
1CF7_A        65 --SKNSIQWKG 73  human
Q8SRS9        72 ----KGKRYFL 78  Encephalitozoon cuniculi
A0BSR6       207 --EGKRVIsdv 215 Paramecium tetraurelia
XP_001314177  66 --TGTTITWVG 74  Trichomonas vaginalis G3
XP_003288094 317 --DKQKISWLG 325 Dictyostelium purpureum
EOB11664      71 ----KNKKYFL 77  Nosema bombycis CQ1
XP_002996121  71 ----KNKKYFM 77  Nosema ceranae BRL01
EIJ87361      71 --EKKMAYltd 79  Nematocida parisii ERTm3
XP_002949174  89 --DKKQIVWRG 97  Volvox carteri f. nagariensis
XP_001693751 440 gkGKKLIVWQG 450 Chlamydomonas reinhardtii
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