1Y6B,3VHE


Conserved Protein Domain Family
PTKc_VEGFR2

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cd05103: PTKc_VEGFR2 
Click on image for an interactive view with Cn3D
Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2
PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 is a member of the VEGFR subfamily of proteins, which are receptor PTKs (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The VEGFR2 subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270681
Aligned: 5 rows
Threshold Bit Score: 691.722
Created: 20-Jul-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ###     #                 ###                #                    
1Y6B_A         21 KWEFPRDRLKLgKPLGRGAFGQVIEADAFGIDKtaTCRTVAVKMLKEGAThsEHRALMSELKILIHIGHHLNVVNLLGAC 100  human
3VHE_A         16 KWEFPRDRLKLgKPLGRGAFGQVIEADAFGIDKtaTCRTVAVKMLKEGAThsEHRALMSELKILIHIGHHLNVVNLLGAC 95   human
Q8AXB3        801 KWEFPQDRLRLgKTLGHGAFGKVVEASAFGIDKisTCKTVAVKMLKVGATnnEWRALMSELKILIHIGHHLNVVNLLGAC 880  zebrafish
AAR26285      817 KWEFPRDRLKLgKPLGRGAFGQVIEADAFGIDKtaTCRTVAVKMLKEGAThsEHRALMSELKILIHIGHHLNVVNLLGAC 896  chicken
XP_002934715  721 KWEFPRDRLKLgKPLGRGAFGQVLEADAFGIDKsgSCKTVAVKMLKEGATtsEHSALMSELKILSHIGHHLNVVNLLGAC 800  western clawe...
Feature 1                 # ##### ##                                                              
1Y6B_A        101 TkpGGPLMVIVEFCKFGNLSTYLRSKRneFVPYKTKGARfrqgkdyv-gaipvdlKRRLDSITSSQSSasSGFVEEKSls 179  human
3VHE_A         96 TkpGGPLMVIVEFCKFGNLSTYLRSKRneFVPYKTKGARfrqgkdyv-gaipvdlKRRLDSITSSQSSasSGFVEEKSls 174  human
Q8AXB3        881 TkrGGPLMIIVEFCKYGNLSNYLRSKRgdFVVYKSQDGKavrsssg--cdlseliKRRLESVASTGSSasSGFIEDKSyc 958  zebrafish
AAR26285      897 TkpGGPLMVIVEYCKFGNLSAYLRSKRseFVPYKTKSARfrqgkenyigdistdlKQRLDSITSSQSStsSGFVEERSls 976  chicken
XP_002934715  801 TkpGGPLMVIVEYCKNGNLSAYLRSKRseFVLYKTKTPRyrkqhyv---evsrdlKRRLDSIASSQSSasSGFAEEKSls 877  western clawe...
Feature 1                                              #      #        #         ###              
1Y6B_A        180 DVEEEEAP---EDLYKdFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEkNVVKICDFGLARDIYKDPDYVR 256  human
3VHE_A        175 DVEEEEAP---EDLYKdFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEkNVVKICDFGLARDIYKDPDYVR 251  human
Q8AXB3        959 DSEEEEEEq--EDLYKkVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEnNVVKICDFGLARDVYKDPDYVR 1036 zebrafish
AAR26285      977 DVEEEDAGs--EDLCKnPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSDnNVVKICDFGLARDIYKDPDYVR 1054 chicken
XP_002934715  878 DVEEEDAGevsEDTCKsSLCMEDLISYSFQVAKGMEYMASRKCIHRDLAARNILLAEnNVVKICDFGLARDIYKDPDYVR 957  western clawe...
Feature 1                                                                                         
1Y6B_A        257 KGDARLPLKWMAPETIFDrVYTIQSDVWSFGVLLWEIFSLGASPYPGVKiDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD 336  human
3VHE_A        252 KGDARLPLKWMAPETIFDrVYTIQSDVWSFGVLLWEIFSLGASPYPGVKiDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD 331  human
Q8AXB3       1037 KGDARLPLKWMAPEAIFDkIYTTQSDVWSFGVLMWEIFSLGASPYPGLHiDEEFCCRLKEGTRMKAPEYSSSEIYQTMLD 1116 zebrafish
AAR26285     1055 KGDARLPLKWMAPETIFDrVYTIQSDVWSFGVLLWEIFSLGASPYPGVKiDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD 1134 chicken
XP_002934715  958 KGDARLPLKWMAPETIFDrVYTTQSDVWSFGVLLWEIFSLGASPYPGVQiDEDFCRRLKEGTRMRAPEYATVEIYQTMLD 1037 western clawe...
Feature 1                                   
1Y6B_A        337 CWHGePSQRPTFSELVEHLGNLLQAN 362  human
3VHE_A        332 CWHGePSQRPTFSELVEHLGNLLQAN 357  human
Q8AXB3       1117 CWHGePSQRPTFTELVERLGDLLQAS 1142 zebrafish
AAR26285     1135 CWHGdPKQRPTFSELVEHLGNLLQAN 1160 chicken
XP_002934715 1038 CWHGdPQQRPVFSELVEHLGNLLQAS 1063 western clawed frog

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