3V97,3LDU,3K0B,3LDG,3TMA,3TLJ


Conserved Protein Domain Family
THUMP_AdoMetMT

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cd11715: THUMP_AdoMetMT 
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THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
Proteins of this family contain an N-terminal THUMP domain and a C-terminal S-adenosylmethionine-dependent methyltransferase domain. Members have been implicated in the modification of 23S RNA m2G2445, a highly conserved modification in bacteria and in the m2G6 modification of tRNA. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets.
Statistics
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PSSM-Id: 212584
Aligned: 387 rows
Threshold Bit Score: 42.9525
Created: 11-Apr-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3V97_A         5 LFASTArGLEELLKTELENLGav---eCQVVqGGVHFKgdt-rlVYQSLMWsRLASRIMLPLGECKvy--sDLDLYLGVQ 78  Escherichia col...
YP_003435967   3 FYSTTApGLEDVAAEELKELGcri-keERKGkGRVFFEaei-edIPKLNCFsRCSERIVLLLGRFKve--kLEDVYKAVK 78  Ferroglobus pla...
YP_001737097   3 FYATCTpGLEFISAKEIEGKGlgrlieLREGrGRVIFEsey-dmIPSLNCSlRSVERIVLLLARERts--eLDGIYRAVK 79  Candidatus Kora...
O28105        33 FYATLTpGLEDVAAKEVESFGckv-eeIRERrGRIFFSgek-saIPLLNHFsRTLERLNVLLLRCEve--gLDDIYAAVK 108 Archaeoglobus f...
Q57880         3 YYVTLSpGLEKISKNEIESFGgki-keIRENkGRIFFSgdl-klIPKINYLsRTIERMNILLHREEipniaLDDIYKRVY 80  Methanocaldococ...
YP_003401178   3 IYATTTpGLEDVSANEIELLGgkv-eeVRFGkGRVFLTgdl-elVAKLNYLaRTLERVMILLRVEKfe--kLDDIYRIVK 78  Archaeoglobus p...
YP_004004216   3 FYVTFPpGLEEVVKQELQNCYkv--kiEKAErGRVYFRgse-klIPDLNYWgRYWERVVWLLHKDEvk--dLEEIYKKVR 77  Methanothermus ...
YP_003859963  23 LLLTCDtGLETLLLDEISSLVdi--dnYYMFpGRVFITis--ndRIANVFRsRIVNNIYLLLFISNni-dsLDKIYNVIR 97  Ignisphaera agg...
BAJ46715       3 FFATTFsGLEDIAAAELSSLLgg---eAEADvGKVFFTasl-eeCLKVNYAaQTVNRVFLLLLREHae--tLDEIERLAA 76  uncultured cren...
YP_004825187  27 PVVSCAaGFEPVVAEELHELGyt---aHYLKpAKLVVPaagpeaCPALNFYpHTVHRVYLLLGLGRap--tLQDVRALAQ 101 Rhodothermus ma...
3V97_A        79 AINwtemfnpgATFAVHFSGLndtirNSQYGAMKVKDAIVDaftrknlprpnVDRDapdIRVNVWLHkeTASIALDLSG 157 Escherichia coli...
YP_003435967  79 SIDfsfi-kpeQSFAIRANRVgehgfTSIDIAREAGQAVIDrykedfgvrlrVNLDepdVIIRCDLVddDFVVGVDTTG 156 Ferroglobus plac...
YP_001737097  80 GIDfsfm-rpeWSFAVRSNRLgehdfTSVDIGRVAGQAVIDsymeargvrlkVNLDspdVIVRCDLIkdELLVGIDMTG 157 Candidatus Korar...
O28105       109 GLDfsf--vkgKSFAIRSLRVgehdfTSMDIARVAGQAVIDsfmesygerlkVNLNqpdVIIRVELVdsELFVGVDTTG 185 Archaeoglobus fu...
Q57880        81 NIDwtewikenQSFAIRPLRAgehnfTSIDIGRVAGEAVIKsyqrdknirlkVNLDepdVIVRVEVIfdELIVGIDTTG 159 Methanocaldococc...
YP_003401178  79 EIDfsfi-kpnQSFAIRPLRVgnhdfTSLDVGRVAGQAVIDsymesggvrlkVNLDepdVIIRVDVIndEVYVGLDTTG 156 Archaeoglobus pr...
YP_004004216  78 SIDfsfi-kpnQSFAIRSKRFgehdfTSMDIARVAGQAVIDsylssknkrleVNLDepdVIVRVELIdnLLLVGIDTTG 155 Methanothermus f...
YP_003859963  98 SIDfshtiyphESFAIRSERIgqhtfTSIDIARVAGQAVIDsymasrgvrlkVNLDnpdIEIYTELNndRLLVGLALTR 176 Ignisphaera aggr...
BAJ46715      77 SVDfgefidreQSFAVRAERVglhvfTSLDIAAAVGKAVIDsyrastgvrlrVDLNnpdIEVYGILRntELLLGVNTTG 155 uncultured crena...
YP_004825187 102 AVPfhaylhpeQRFAVRAQRHgshdfTSMDVAREVGSAVVErvqahtgrrirADLDapdVEIMAELSddQLLLLLNTSG 180 Rhodothermus mar...
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